Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

CT Trinh, A Wlaschin, F Srienc - Applied microbiology and biotechnology, 2009 - Springer
Elementary mode analysis is a useful metabolic pathway analysis tool to identify the
structure of a metabolic network that links the cellular phenotype to the corresponding …

Mini-review: Lactoferrin: a bioinspired, anti-biofilm therapeutic

MC Ammons, V Copié - Biofouling, 2013 - Taylor & Francis
Medically relevant biofilms have gained a significant level of interest, in part because of the
epidemic rise in obesity and an aging population in the developed world. The associated …

Metabolic costs of amino acid and protein production in Escherichia coli

C Kaleta, S Schäuble, U Rinas… - Biotechnology …, 2013 - Wiley Online Library
Escherichia coli is the most popular microorganism for the production of recombinant
proteins and is gaining increasing importance for the production of low‐molecular weight …

[BOK][B] Fermentation microbiology and biotechnology

EMT El-Mansi, J Nielsen, D Mousdale, RP Carlson - 2018 - books.google.com
Fermentation Microbiology and Biotechnology, 4th Edition explores and illustrates the broad
array of metabolic pathways employed for the production of primary and secondary …

Metabolic networks: how to identify key components in the regulation of metabolism and growth

M Stitt, R Sulpice, J Keurentjes - Plant physiology, 2010 - academic.oup.com
Plants display enormous diversity in their metabolism. Although the biosynthesis and
function of the myriad plant metabolites have been studied for decades, we have little …

In a quest for engineering acidophiles for biomining applications: challenges and opportunities

Y Gumulya, NJ Boxall, HN Khaleque, V Santala… - Genes, 2018 - mdpi.com
Biomining with acidophilic microorganisms has been used at commercial scale for the
extraction of metals from various sulfide ores. With metal demand and energy prices on the …

[HTML][HTML] Microbial consortia engineering for cellular factories: in vitro to in silico systems

HC Bernstein, RP Carlson - Computational and structural biotechnology …, 2012 - Elsevier
This mini-review discusses the current state of experimental and computational microbial
consortia engineering with a focus on cellular factories. A discussion of promising ecological …

The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner–Doudoroff glycolytic pathway

M Fabris, M Matthijs, S Rombauts… - The plant …, 2012 - Wiley Online Library
Diatoms are one of the most successful groups of unicellular eukaryotic algae. Successive
endosymbiotic events contributed to their flexible metabolism, making them competitive in …

Division of labour and the evolution of multicellularity

I Ispolatov, M Ackermann… - Proceedings of the …, 2012 - royalsocietypublishing.org
Understanding the emergence and evolution of multicellularity and cellular differentiation is
a core problem in biology. We develop a quantitative model that shows that a multicellular …

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

GE Pinchuk, EA Hill, OV Geydebrekht… - PLoS computational …, 2010 - journals.plos.org
Shewanellae are gram-negative facultatively anaerobic metal-reducing bacteria commonly
found in chemically (ie, redox) stratified environments. Occupying such niches requires the …