Conceptual and empirical bridges between micro-and macroevolution

J Rolland, LF Henao-Diaz, M Doebeli… - Nature Ecology & …, 2023 - nature.com
Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a
unifying framework spanning multiple evolutionary scales. Here we argue that although …

The incomplete natural history of mitochondria

JWO Ballard, MC Whitlock - Molecular ecology, 2004 - Wiley Online Library
Mitochondrial DNA (mtDNA) has been used to study molecular ecology and
phylogeography for 25 years. Much important information has been gained in this way, but it …

Fast dating using least-squares criteria and algorithms

TH To, M Jung, S Lycett, O Gascuel - Systematic biology, 2016 - academic.oup.com
Phylogenies provide a useful way to understand the evolutionary history of genetic samples,
and data sets with more than a thousand taxa are becoming increasingly common, notably …

Relaxed phylogenetics and dating with confidence

AJ Drummond, SYW Ho, MJ Phillips, A Rambaut - PLoS biology, 2006 - journals.plos.org
In phylogenetics, the unrooted model of phylogeny and the strict molecular clock model are
two extremes of a continuum. Despite their dominance in phylogenetic inference, it is …

Accelerating Markov chain Monte Carlo simulation by differential evolution with self-adaptive randomized subspace sampling

JA Vrugt, CJF ter Braak, CGH Diks… - International journal of …, 2009 - degruyter.com
Abstract Markov chain Monte Carlo (MCMC) methods have found widespread use in many
fields of study to estimate the average properties of complex systems, and for posterior …

Genetic analyses from ancient DNA

S Pääbo, H Poinar, D Serre… - Annu. Rev …, 2004 - annualreviews.org
▪ Abstract About 20 years ago, DNA sequences were separately described from the quagga
(a type of zebra) and an ancient Egyptian individual. What made these DNA sequences …

[KSIĄŻKA][B] Reconstructing quaternary environments

JJ Lowe, M Walker - 2014 - taylorfrancis.com
This third edition of Reconstructing Quaternary Environments has been completely revised
and updated to provide a new account of the history and scale of environmental changes …

Time‐dependent rates of molecular evolution

SYW Ho, R Lanfear, L Bromham, MJ Phillips… - Molecular …, 2011 - Wiley Online Library
For over half a century, it has been known that the rate of morphological evolution appears
to vary with the time frame of measurement. Rates of microevolutionary change, measured …

Ancient dna

E Willerslev, A Cooper - Proceedings of the Royal …, 2005 - royalsocietypublishing.org
In the past two decades, ancient DNA research has progressed from the retrieval of small
fragments of mitochondrial DNA from a few late Holocene specimens, to large-scale studies …

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

SYW Ho, MJ Phillips - Systematic biology, 2009 - academic.oup.com
The estimation of phylogenetic divergence times from sequence data is an important
component of many molecular evolutionary studies. There is now a general appreciation …