[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Antimicrobial resistance in rivers: a review of the genes detected and new challenges
P Grenni - Environmental Toxicology and Chemistry, 2022 - Wiley Online Library
River ecosystems are very important parts of the water cycle and an excellent habitat, food,
and drinking water source for many organisms, including humans. Antibiotics are emerging …
and drinking water source for many organisms, including humans. Antibiotics are emerging …
The reliability of metagenome-assembled genomes (MAGs) in representing natural populations: insights from comparing MAGs against isolate genomes derived from …
The recovery of metagenome-assembled genomes (MAGs) from metagenomic data has
recently become a common task for microbial studies. The strengths and limitations of the …
recently become a common task for microbial studies. The strengths and limitations of the …
Source tracking of antibiotic resistance genes in the environment—Challenges, progress, and prospects
Antibiotic resistance has become a global public health concern, rendering common
infections untreatable. Given the widespread occurrence, increasing attention is being …
infections untreatable. Given the widespread occurrence, increasing attention is being …
Reply to:“Re-evaluating the evidence for a universal genetic boundary among microbial species”
It has recently been reported 1 that when one removes multiple genomes within a named
species or species defined at the 95% genome-aggregate average nucleotide identity (ANI) …
species or species defined at the 95% genome-aggregate average nucleotide identity (ANI) …
Two decades of bacterial ecology and evolution in a freshwater lake
Ecology and evolution are considered distinct processes that interact on contemporary time
scales in microbiomes. Here, to observe these processes in a natural system, we collected a …
scales in microbiomes. Here, to observe these processes in a natural system, we collected a …
A user's guide to the bioinformatic analysis of shotgun metagenomic sequence data for bacterial pathogen detection
Metagenomics, ie, shotgun sequencing of the total microbial community DNA from a sample,
has become a mature technique but its application to pathogen detection in clinical …
has become a mature technique but its application to pathogen detection in clinical …
Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
Members of the SAR11 order Pelagibacterales dominate the surface oceans. Their
extensive diversity challenges emerging operational boundaries defined for …
extensive diversity challenges emerging operational boundaries defined for …
Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences
Recent advances in sequencing technology and bioinformatic pipelines have allowed
unprecedented access to the genomes of yet‐uncultivated microorganisms from diverse …
unprecedented access to the genomes of yet‐uncultivated microorganisms from diverse …
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
With advances in DNA sequencing and miniaturized molecular biology workflows, rapid and
affordable sequencing of single-cell genomes has become a reality. Compared to 16S rRNA …
affordable sequencing of single-cell genomes has become a reality. Compared to 16S rRNA …