Growing fine-grained multicellular robots
Engineers are torn between an attitude of strong design and dreams of autonomous
devices. They want full mastery of their artifacts while wishing these were much more …
devices. They want full mastery of their artifacts while wishing these were much more …
[HTML][HTML] Fishing forward and reverse: Advances in zebrafish phenomics
Understanding how the genome instructs the phenotypic characteristics of an organism is
one of the major scientific endeavors of our time. Advances in genetics have progressively …
one of the major scientific endeavors of our time. Advances in genetics have progressively …
A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation
The study of multicellular development is grounded in two complementary domains: cell
biomechanics, which examines how physical forces shape the embryo, and genetic …
biomechanics, which examines how physical forces shape the embryo, and genetic …
Zebrafish neuromesodermal progenitors undergo a critical state transition in vivo
The transition state model of cell differentiation proposes that a transient window of gene
expression stochasticity precedes entry into a differentiated state. Here, we assess this …
expression stochasticity precedes entry into a differentiated state. Here, we assess this …
Dynamics of Drosophila endoderm specification
During early Drosophila embryogenesis, a network of gene regulatory interactions
orchestrates terminal patterning, playing a critical role in the subsequent formation of the gut …
orchestrates terminal patterning, playing a critical role in the subsequent formation of the gut …
How computation is hel** unravel the dynamics of morphogenesis
The growing availability of imaging data, calculation power, and algorithm sophistication are
transforming the study of morphogenesis into a computation-driven discipline. In parallel, it …
transforming the study of morphogenesis into a computation-driven discipline. In parallel, it …
3-D registration of biological images and models: registration of microscopic images and its uses in segmentation and annotation
The registration, segmentation, and annotation of microscopy images and respective
biological objects (eg, cells) are distinct challenges often encountered in bioimage …
biological objects (eg, cells) are distinct challenges often encountered in bioimage …
Unsupervised spatio-temporal classification of deformation patterns of embryonic tissues matches their fate map
During morphogenesis, embryonic tissues display fluid-like behavior with fluctuating strain
rates. Digital cell lineages reconstructed from 4D images of develo** zebrafish embryos …
rates. Digital cell lineages reconstructed from 4D images of develo** zebrafish embryos …
Programming the emergence in morphogenetically architected complex systems
Large sets of elements interacting locally and producing specific architectures reliably form a
category that transcends the usual dividing line between biological and engineered …
category that transcends the usual dividing line between biological and engineered …
An integrated modelling framework from cells to organism based on a cohort of digital embryos
We conducted a quantitative comparison of develo** sea urchin embryos based on the
analysis of five digital specimens obtained by automatic processing of in toto 3D+ time …
analysis of five digital specimens obtained by automatic processing of in toto 3D+ time …