Growing fine-grained multicellular robots

R Doursat, C Sánchez - Soft Robotics, 2014 - liebertpub.com
Engineers are torn between an attitude of strong design and dreams of autonomous
devices. They want full mastery of their artifacts while wishing these were much more …

[HTML][HTML] Fishing forward and reverse: Advances in zebrafish phenomics

R Fuentes, J Letelier, B Tajer, LE Valdivia… - Mechanisms of …, 2018 - Elsevier
Understanding how the genome instructs the phenotypic characteristics of an organism is
one of the major scientific endeavors of our time. Advances in genetics have progressively …

A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation

J Delile, M Herrmann, N Peyriéras, R Doursat - Nature communications, 2017 - nature.com
The study of multicellular development is grounded in two complementary domains: cell
biomechanics, which examines how physical forces shape the embryo, and genetic …

Zebrafish neuromesodermal progenitors undergo a critical state transition in vivo

K Toh, D Saunders, B Verd, B Steventon - Iscience, 2022 - cell.com
The transition state model of cell differentiation proposes that a transient window of gene
expression stochasticity precedes entry into a differentiated state. Here, we assess this …

Dynamics of Drosophila endoderm specification

SE Keenan, M Avdeeva, L Yang… - Proceedings of the …, 2022 - National Acad Sciences
During early Drosophila embryogenesis, a network of gene regulatory interactions
orchestrates terminal patterning, playing a critical role in the subsequent formation of the gut …

How computation is hel** unravel the dynamics of morphogenesis

D Pastor-Escuredo, JC del Álamo - Frontiers in Physics, 2020 - frontiersin.org
The growing availability of imaging data, calculation power, and algorithm sophistication are
transforming the study of morphogenesis into a computation-driven discipline. In parallel, it …

3-D registration of biological images and models: registration of microscopic images and its uses in segmentation and annotation

L Qu, F Long, H Peng - IEEE Signal Processing Magazine, 2014 - ieeexplore.ieee.org
The registration, segmentation, and annotation of microscopy images and respective
biological objects (eg, cells) are distinct challenges often encountered in bioimage …

Unsupervised spatio-temporal classification of deformation patterns of embryonic tissues matches their fate map

D Pastor-Escuredo, B Lombardot, T Savy, A Boyreau… - iScience, 2025 - cell.com
During morphogenesis, embryonic tissues display fluid-like behavior with fluctuating strain
rates. Digital cell lineages reconstructed from 4D images of develo** zebrafish embryos …

Programming the emergence in morphogenetically architected complex systems

F Varenne, P Chaigneau, J Petitot, R Doursat - Acta biotheoretica, 2015 - Springer
Large sets of elements interacting locally and producing specific architectures reliably form a
category that transcends the usual dividing line between biological and engineered …

An integrated modelling framework from cells to organism based on a cohort of digital embryos

P Villoutreix, J Delile, B Rizzi, L Duloquin, T Savy… - Scientific reports, 2016 - nature.com
We conducted a quantitative comparison of develo** sea urchin embryos based on the
analysis of five digital specimens obtained by automatic processing of in toto 3D+ time …