Post-molecular systematics and the future of phylogenetics

RA Pyron - Trends in Ecology & Evolution, 2015 - cell.com
The time is past when a research program in systematics should be based on only a few
genes, extant taxa, and ultrametric trees. Cheap genome sequencing, powerful statistical …

A species-level phylogeny of extant snakes with description of a new colubrid subfamily and genus

A Figueroa, AD McKelvy, LL Grismer, CD Bell… - PloS one, 2016 - journals.plos.org
Background With over 3,500 species encompassing a diverse range of morphologies and
ecologies, snakes make up 36% of squamate diversity. Despite several attempts at …

Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling

S Reddy, RT Kimball, A Pandey, PA Hosner… - Systematic …, 2017 - academic.oup.com
Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …

Resolving a phylogenetic hypothesis for parrots: implications from systematics to conservation

KL Provost, L Joseph, BT Smith - Emu-Austral Ornithology, 2018 - Taylor & Francis
Advances in sequencing technology and phylogenetics have revolutionised avian biology
by providing an evolutionary framework for studying natural grou**s. In the parrots …

Avoiding missing data biases in phylogenomic inference: an empirical study in the landfowl (Aves: Galliformes)

PA Hosner, BC Faircloth, TC Glenn… - Molecular biology …, 2016 - academic.oup.com
Production of massive DNA sequence data sets is transforming phylogenetic inference, but
best practices for analyzing such data sets are not well established. One uncertainty is …

Tectonic collision and uplift of Wallacea triggered the global songbird radiation

RG Moyle, CH Oliveros, MJ Andersen… - Nature …, 2016 - nature.com
Songbirds (oscine passerines) are the most species-rich and cosmopolitan bird group,
comprising almost half of global avian diversity. Songbirds originated in Australia, but the …

Tempo and pattern of avian brain size evolution

DT Ksepka, AM Balanoff, NA Smith, GS Bever… - Current Biology, 2020 - cell.com
Relative brain sizes in birds can rival those of primates, but large-scale patterns and drivers
of avian brain evolution remain elusive. Here, we explore the evolution of the fundamental …

Feeding ecology is the primary driver of beak shape diversification in waterfowl

AM Olsen - Functional Ecology, 2017 - Wiley Online Library
The diversity of beak shapes among birds is often assumed to be largely the result of
adaptations to different feeding behaviors and diets. However, this assumption has only …

A phylogenomic supertree of birds

RT Kimball, CH Oliveros, N Wang, ND White, FK Barker… - Diversity, 2019 - mdpi.com
It has long been appreciated that analyses of genomic data (eg, whole genome sequencing
or sequence capture) have the potential to reveal the tree of life, but it remains challenging …

Nest architecture influences host use by avian brood parasites and is shaped by coevolutionary dynamics

ME Hauber, J Nagy, C Sheard… - … of the Royal …, 2024 - royalsocietypublishing.org
Brood (social) parasites and their hosts exhibit a wide range of adaptations and counter-
adaptations as part of their ongoing coevolutionary arms races. Obligate avian brood …