Genotype–environment associations to reveal the molecular basis of environmental adaptation

JR Lasky, EB Josephs, GP Morris - The Plant Cell, 2023 - academic.oup.com
A fundamental goal in plant biology is to identify and understand the variation underlying
plants' adaptation to their environment. Climate change has given new urgency to this goal …

[HTML][HTML] Global wheat head detection 2021: An improved dataset for benchmarking wheat head detection methods

E David, M Serouart, D Smith, S Madec… - Plant …, 2021 - spj.science.org
Abstract The Global Wheat Head Detection (GWHD) dataset was created in 2020 and has
assembled 193,634 labelled wheat heads from 4700 RGB images acquired from various …

From multivariate to functional data analysis: Fundamentals, recent developments, and emerging areas

Y Li, Y Qiu, Y Xu - Journal of Multivariate Analysis, 2022 - Elsevier
Functional data analysis (FDA), which is a branch of statistics on modeling infinite
dimensional random vectors resided in functional spaces, has become a major research …

Comparing deep learning approaches for understanding genotype× phenotype interactions in biomass sorghum

Z Zhang, M Pope, N Shakoor, R Pless… - Frontiers in Artificial …, 2022 - frontiersin.org
We explore the use of deep convolutional neural networks (CNNs) trained on overhead
imagery of biomass sorghum to ascertain the relationship between single nucleotide …

SG× P: a sorghum genotype× phenotype prediction dataset and benchmark

Z Zhang, R Pless, N Shakoor… - Advances in …, 2024 - proceedings.neurips.cc
Large scale field-phenoty** approaches have the potential to solve important questions
about the relationship of plant genotype to plant phenotype. Computational approaches to …

Parallel tuning of semi‐dwarfism via differential splicing of Brachytic1 in commercial maize and smallholder sorghum

S Jiao, S Mamidi, MA Chamberlin, M Beatty… - New …, 2023 - Wiley Online Library
In the current genomic era, the search and deployment of new semi‐dwarf alleles have
continued to develop better plant types in all cereals. We characterized an agronomically …

Early Detection of Drought Stress in Durum Wheat Using Hyperspectral Imaging and Photosystem Sensing

B Roy, V Sagan, A Haireti, M Newcomb, R Tuberosa… - Remote Sensing, 2023 - mdpi.com
Wheat, being the third largest US crop and the principal food grain, faces significant risks
from climate extremes such as drought. This necessitates identifying and develo** …

Globally deployed sorghum aphid resistance gene RMES1 is vulnerable to biotype shifts but is bolstered by RMES2

C VanGessel, B Rice, TJ Felderhoff… - The Plant …, 2024 - Wiley Online Library
Durable host plant resistance (HPR) to insect pests is critical for sustainable agriculture.
Natural variation exists for aphid HPR in sorghum (Sorghum bicolor), but the genetic …