Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …
Cleavable Cross-Linkers and Mass Spectrometry for the Ultimate Task of Profiling Protein–Protein Interaction Networks in Vivo
M Matzinger, K Mechtler - Journal of proteome research, 2020 - ACS Publications
Cross-linking mass spectrometry (XL-MS) has matured into a potent tool to identify protein–
protein interactions or to uncover protein structures in living cells, tissues, or organelles. The …
protein interactions or to uncover protein structures in living cells, tissues, or organelles. The …
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides
We describe pLink 2, a search engine with higher speed and reliability for proteome-scale
identification of cross-linked peptides. With a two-stage open search strategy facilitated by …
identification of cross-linked peptides. With a two-stage open search strategy facilitated by …
Dynamic interactomics by cross-linking mass spectrometry: map** the daily cell life in postgenomic era
The majority of processes that occur in daily cell life are modulated by hundreds to
thousands of dynamic protein–protein interactions (PPI). The resulting protein complexes …
thousands of dynamic protein–protein interactions (PPI). The resulting protein complexes …
Mass Spectrometry Structural Proteomics Enabled by Limited Proteolysis and Cross‐Linking
The exploration of protein structure and function stands at the forefront of life science and
represents an ever‐expanding focus in the development of proteomics. As mass …
represents an ever‐expanding focus in the development of proteomics. As mass …
High-sensitivity proteome-scale searches for crosslinked peptides using CRIMP 2.0
Crosslinking mass spectrometry (XL-MS) is a valuable technique for generating point-to-
point distance measurements in protein space. However, cell-based XL-MS experiments …
point distance measurements in protein space. However, cell-based XL-MS experiments …
Cross‐linking reactions in food proteins and proteomic approaches for their detection
Various protein cross‐linking reactions leading to molecular polymerization and covalent
aggregates have been described in processed foods. They are an undesired side effect of …
aggregates have been described in processed foods. They are an undesired side effect of …
Exhaustive cross-linking search with protein feedback
Improving the sensitivity of protein–protein interaction detection and protein structure
probing is a principal challenge in cross-linking mass spectrometry (XL-MS) data analysis. In …
probing is a principal challenge in cross-linking mass spectrometry (XL-MS) data analysis. In …
Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex
MJ Birklbauer, F Müller, SS Geetha… - Communications …, 2024 - nature.com
The field of crosslinking mass spectrometry has seen substantial advancements over the
past decades, enabling the structural analysis of proteins and protein complexes and …
past decades, enabling the structural analysis of proteins and protein complexes and …
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis
Background Cross-linking mass spectrometry (XL-MS) is a powerful technique for detecting
protein–protein interactions (PPIs) and modeling protein structures in a high-throughput …
protein–protein interactions (PPIs) and modeling protein structures in a high-throughput …