Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non‐traditional microorganisms

P Calero, PI Nikel - Microbial Biotechnology, 2019 - Wiley Online Library
The last few years have witnessed an unprecedented increase in the number of novel
bacterial species that hold potential to be used for metabolic engineering. Historically …

Cold shock response in bacteria

Y Zhang, CA Gross - Annual Review of Genetics, 2021 - annualreviews.org
Bacteria often encounter temperature fluctuations in their natural habitats and must adapt to
survive. The molecular response of bacteria to sudden temperature upshift or downshift is …

Genome-wide gene expression tuning reveals diverse vulnerabilities of M. tuberculosis

B Bosch, MA DeJesus, NC Poulton, W Zhang… - Cell, 2021 - cell.com
Antibacterial agents target the products of essential genes but rarely achieve complete
target inhibition. Thus, the all-or-none definition of essentiality afforded by traditional genetic …

The current state of SubtiWiki, the database for the model organism Bacillus subtilis

T Pedreira, C Elfmann, J Stülke - Nucleic Acids Research, 2022 - academic.oup.com
Bacillus subtilis is a Gram-positive model bacterium with extensive documented annotation.
However, with the rise of high-throughput techniques, the amount of complex data being …

Evolution-guided discovery of antibiotics that inhibit peptidoglycan remodelling

EJ Culp, N Waglechner, W Wang, AA Fiebig-Comyn… - Nature, 2020 - nature.com
Addressing the ongoing antibiotic crisis requires the discovery of compounds with novel
mechanisms of action that are capable of treating drug-resistant infections. Many antibiotics …

Emerging and evolving concepts in gene essentiality

G Rancati, J Moffat, A Typas, N Pavelka - Nature Reviews Genetics, 2018 - nature.com
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …

Microbe Profile: Bacillus subtilis: model organism for cellular development, and industrial workhorse

J Errington, LT Aart - Microbiology, 2020 - microbiologyresearch.org
Bacillus subtilis is the best studied model organism of the Gram-positive lineage. It is
naturally transformable and has an extremely powerful genetic toolbox. It is fast growing and …

[HTML][HTML] Probiotic Bacillus subtilis protects against α-synuclein aggregation in C. elegans

ME Goya, F Xue, C Sampedro-Torres-Quevedo… - Cell reports, 2020 - cell.com
Recent discoveries have implicated the gut microbiome in the progression and severity of
Parkinson's disease; however, how gut bacteria affect such neurodegenerative disorders …

Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi

JM Peters, BM Koo, R Patino, GE Heussler… - Nature …, 2019 - nature.com
The vast majority of bacteria, including human pathogens and microbiome species, lack
genetic tools needed to systematically associate genes with phenotypes. This is the major …

Advances and prospects of Bacillus subtilis cellular factories: from rational design to industrial applications

Y Gu, X Xu, Y Wu, T Niu, Y Liu, J Li, G Du, L Liu - Metabolic engineering, 2018 - Elsevier
Bacillus subtilis is the most characterized gram-positive bacterium that has significant
attributes, such as growing well on cheap carbon sources, possessing clear inherited …