[HTML][HTML] The next-generation sequencing revolution and its impact on genomics

DC Koboldt, KM Steinberg, DE Larson, RK Wilson… - Cell, 2013 - cell.com
Genomics is a relatively new scientific discipline, having DNA sequencing as its core
technology. As technology has improved the cost and scale of genome characterization over …

A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease

DP Wightman, IE Jansen, JE Savage, AA Shadrin… - Nature …, 2021 - nature.com
Late-onset Alzheimer's disease is a prevalent age-related polygenic disease that accounts
for 50–70% of dementia cases. Currently, only a fraction of the genetic variants underlying …

How important are rare variants in common disease?

A Saint Pierre, E Génin - Briefings in functional genomics, 2014 - academic.oup.com
Genome-wide association studies have uncovered hundreds of common genetic variants
involved in complex diseases. However, for most complex diseases, these common genetic …

Frequency of pathogenic germline variants in cancer-susceptibility genes in patients with osteosarcoma

L Mirabello, B Zhu, R Koster, E Karlins, M Dean… - JAMA …, 2020 - jamanetwork.com
Importance Osteosarcoma, the most common malignant bone tumor in children and
adolescents, occurs in a high number of cancer predisposition syndromes that are defined …

Increased burden of ultra-rare protein-altering variants among 4,877 individuals with schizophrenia

G Genovese, M Fromer, EA Stahl, DM Ruderfer… - Nature …, 2016 - nature.com
By analyzing the exomes of 12,332 unrelated Swedish individuals, including 4,877
individuals affected with schizophrenia, in ways informed by exome sequences from 45,376 …

HPV16 E7 genetic conservation is critical to carcinogenesis

L Mirabello, M Yeager, K Yu, GM Clifford, Y **ao, B Zhu… - Cell, 2017 - cell.com
Although most cervical human papillomavirus type 16 (HPV16) infections become
undetectable within 1–2 years, persistent HPV16 causes half of all cervical cancers. We …

Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines

P Scepanovic, C Alanio, C Hammer, F Hodel… - Genome medicine, 2018 - Springer
Background Humoral immune responses to infectious agents or vaccination vary
substantially among individuals, and many of the factors responsible for this variability …

Association of genetic variants in NUDT15 with thiopurine-induced myelosuppression in patients with inflammatory bowel disease

GJ Walker, JW Harrison, GA Heap, MD Voskuil… - Jama, 2019 - jamanetwork.com
Importance Use of thiopurines may be limited by myelosuppression. TPMTpharmacogenetic
testing identifies only 25% of at-risk patients of European ancestry. Among patients of East …

Independent impacts of aging on mitochondrial DNA quantity and quality in humans

R Zhang, Y Wang, K Ye, M Picard, Z Gu - BMC genomics, 2017 - Springer
Background The accumulation of mitochondrial DNA (mtDNA) mutations, and the reduction
of mtDNA copy number, both disrupt mitochondrial energetics, and may contribute to aging …

Efficient variant set mixed model association tests for continuous and binary traits in large-scale whole-genome sequencing studies

H Chen, JE Huffman, JA Brody, C Wang, S Lee… - The American Journal of …, 2019 - cell.com
With advances in whole-genome sequencing (WGS) technology, more advanced statistical
methods for testing genetic association with rare variants are being developed. Methods in …