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Semantic similarity and machine learning with ontologies
Ontologies have long been employed in the life sciences to formally represent and reason
over domain knowledge and they are employed in almost every major biological database …
over domain knowledge and they are employed in almost every major biological database …
The human phenotype ontology in 2017
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …
phenotypic abnormalities in which the individual components of the phenotype are observed …
Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers
Computational drug repurposing aims to identify new indications for existing drugs by
utilizing high-throughput data, often in the form of biomedical knowledge graphs. However …
utilizing high-throughput data, often in the form of biomedical knowledge graphs. However …
rrvgo: a Bioconductor package for interpreting lists of Gene Ontology terms
Gene Ontology (GO) annotation is often used to guide the biological interpretation of high-
throughput omics experiments, eg by analysing lists of differentially regulated genes for …
throughput omics experiments, eg by analysing lists of differentially regulated genes for …
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
Background Stratification of patients with post-acute sequelae of SARS-CoV-2 infection
(PASC, or long COVID) would allow precision clinical management strategies. However …
(PASC, or long COVID) would allow precision clinical management strategies. However …
[PDF][PDF] The human phenotype ontology in 2017
S Kohler, NA Vasilevsky, M Engelstad, E Foster… - 2017 - repository.ubn.ru.nl
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …
phenotypic abnormalities in which the individual components of the phenotype are observed …
REVIGO summarizes and visualizes long lists of gene ontology terms
Outcomes of high-throughput biological experiments are typically interpreted by statistical
testing for enriched gene functional categories defined by the Gene Ontology (GO). The …
testing for enriched gene functional categories defined by the Gene Ontology (GO). The …
[HTML][HTML] A census of human soluble protein complexes
Cellular processes often depend on stable physical associations between proteins. Despite
recent progress, knowledge of the composition of human protein complexes remains limited …
recent progress, knowledge of the composition of human protein complexes remains limited …
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
We have developed a new COFACTOR webserver for automated structure-based protein
function annotation. Starting from a structural model, given by either experimental …
function annotation. Starting from a structural model, given by either experimental …
[ספר][B] Semantic similarity from natural language and ontology analysis
Artificial Intelligence federates numerous scientific fields in the aim of develo** machines
able to assist human operators performing complex treatments---most of which demand high …
able to assist human operators performing complex treatments---most of which demand high …