Coarse-grained modelling out of equilibrium

T Schilling - Physics Reports, 2022 - Elsevier
Abstract Active matter, responsive (“smart”) materials and materials under time-dependent
load are systems out of thermal equilibrium. To construct coarse-grained models for such …

High-entropy high-hardness metal carbides discovered by entropy descriptors

P Sarker, T Harrington, C Toher, C Oses… - Nature …, 2018 - nature.com
High-entropy materials have attracted considerable interest due to the combination of useful
properties and promising applications. Predicting their formation remains the major …

Energy landscapes: calculating pathways and rates

DJ Wales - International Reviews in Physical Chemistry, 2006 - Taylor & Francis
The stationary points of a potential energy surface provide a convenient framework for
coarse-graining calculations of thermodynamics and kinetics. Thermodynamic properties …

Modeling and simulations of polymers: a roadmap

TE Gartner III, A Jayaraman - Macromolecules, 2019 - ACS Publications
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …

Electronic and magnetic properties of single-layer metal phosphorous trichalcogenides

BL Chittari, Y Park, D Lee, M Han, AH MacDonald… - Physical Review B, 2016 - APS
We survey the electronic structure and magnetic properties of two-dimensional (2D) MPX 3
(M= V, Cr, Mn, Fe, Co, Ni, Cu, Zn, and X= S, Se, Te) transition-metal chalcogenophosphates …

On the inner workings of Monte Carlo codes

D Dubbeldam, A Torres-Knoop, KS Walton - Molecular Simulation, 2013 - Taylor & Francis
We review state-of-the-art Monte Carlo (MC) techniques for computing fluid coexistence
properties (Gibbs simulations) and adsorption simulations in nanoporous materials such as …

Implicit transfer operator learning: Multiple time-resolution models for molecular dynamics

M Schreiner, O Winther… - Advances in Neural …, 2024 - proceedings.neurips.cc
Computing properties of molecular systems rely on estimating expectations of the
(unnormalized) Boltzmann distribution. Molecular dynamics (MD) is a broadly adopted …

Coarse-grained residue-based models of disordered protein condensates: utility and limitations of simple charge pattern parameters

S Das, AN Amin, YH Lin, HS Chan - Physical Chemistry Chemical …, 2018 - pubs.rsc.org
Biomolecular condensates undergirded by phase separations of proteins and nucleic acids
serve crucial biological functions. To gain physical insights into their genetic basis, we study …

[HTML][HTML] The putative liquid-liquid transition is a liquid-solid transition in atomistic models of water. II

DT Limmer, D Chandler - The Journal of chemical physics, 2013 - pubs.aip.org
The putative liquid-liquid transition is a liquid-solid transition in atomistic models of water. II | The
Journal of Chemical Physics | AIP Publishing Skip to Main Content Umbrella Alt Text Umbrella …

Potential energy and free energy landscapes

DJ Wales, TV Bogdan - The Journal of Physical Chemistry B, 2006 - ACS Publications
Familiar concepts for small molecules may require reinterpretation for larger systems. For
example, rearrangements between geometrical isomers are usually considered in terms of …