The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication

M Gros‐Balthazard, G Besnard, G Sarah… - The Plant …, 2019 - Wiley Online Library
The olive (Olea europaea L. subsp. europaea) is one of the oldest and most socio‐
economically important cultivated perennial crop in the Mediterranean region. Yet, its origins …

Whole-genome sequencing reveals that regulatory and low pleiotropy variants underlie local adaptation to environmental variability in purple sea urchins

C Petak, L Frati, RS Brennan… - The American …, 2023 - journals.uchicago.edu
Organisms experience environments that vary across both space and time. Such
environmental heterogeneity shapes standing genetic variation and may influence species' …

The effects of mutations on gene expression and alternative splicing

M Snyman, S Xu - Proceedings of the Royal Society B, 2023 - royalsocietypublishing.org
Understanding the relationship between mutations and their genomic and phenotypic
consequences has been a longstanding goal of evolutionary biology. However, few studies …

Cis- and Trans-Regulatory Variations in the Domestication of the Chili Pepper Fruit

E Díaz-Valenzuela, RH Sawers… - … biology and evolution, 2020 - academic.oup.com
The process of domestication requires the rapid transformation of the wild morphology into
the cultivated forms that humans select for. This process often takes place through changes …

Effects of a male meiotic driver on male and female transcriptomes in the house mouse

A Lindholm, A Sutter, S Künzel… - Proceedings of the …, 2019 - royalsocietypublishing.org
Not all genetic loci follow Mendel's rules, and the evolutionary consequences of this are not
yet fully known. Genomic conflict involving multiple loci is a likely outcome, as restoration of …

Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.)

CE Grover, MJ Yoo, M Lin, MD Murphy… - G3: Genes …, 2020 - academic.oup.com
The evolution and domestication of cotton is of great interest from both economic and
evolutionary standpoints. Although many genetic and genomic resources have been …

[HTML][HTML] Cis-regulatory variation in plant genomes and the impact of natural selection

J de Meaux - American Journal of Botany, 2018 - ncbi.nlm.nih.gov
Understanding the molecular mechanisms that allow phenotypic diversification in response
to natural or artificial selection is one of the major challenges of modern biology (Barrett and …

Trans-regulatory loci shape natural variation of gene expression plasticity in Arabidopsis

ME Lensink, G Monroe, DJ Kliebenstein - bioRxiv, 2024 - biorxiv.org
Organisms regulate gene expression in response to environmental cues, a process known
as plasticity, to adjust to changing environments. Research into natural variation and the …

[HTML][HTML] Stabilizing selection and adaptation shape cis and trans gene expression variation in C. elegans

AD Bell, F Valencia, AB Paaby - bioRxiv, 2024 - pmc.ncbi.nlm.nih.gov
An outstanding question in the evolution of gene expression is the relative influence of
neutral processes versus natural selection, including adaptive change driven by directional …