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Accelerators for classical molecular dynamics simulations of biomolecules
Atomistic Molecular Dynamics (MD) simulations provide researchers the ability to model
biomolecular structures such as proteins and their interactions with drug-like small …
biomolecular structures such as proteins and their interactions with drug-like small …
Deep molecular representation learning via fusing physical and chemical information
Molecular representation learning is the first yet vital step in combining deep learning and
molecular science. To push the boundaries of molecular representation learning, we present …
molecular science. To push the boundaries of molecular representation learning, we present …
Discovery of Dual Ion-Electron Conductivity of Metal–Organic Frameworks via Machine Learning-Guided Experimentation
Identifying conductive metal–organic frameworks (MOFs) with a coupled ion-electron
behavior from a vast array of existing MOFs offers a cost-effective strategy to tap into their …
behavior from a vast array of existing MOFs offers a cost-effective strategy to tap into their …
HDBind: encoding of molecular structure with hyperdimensional binary representations
Traditional methods for identifying “hit” molecules from a large collection of potential drug-
like candidates rely on biophysical theory to compute approximations to the Gibbs free …
like candidates rely on biophysical theory to compute approximations to the Gibbs free …
Small molecules targeting SARS-CoV-2 spike glycoprotein receptor-binding domain
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused the
coronavirus disease 2019 (COVID-19) pandemic. Several variants of SARS-CoV-2 have …
coronavirus disease 2019 (COVID-19) pandemic. Several variants of SARS-CoV-2 have …
Clustering protein binding pockets and identifying potential drug interactions: a novel ligand-based featurization method
GA Stevenson, D Kirshner, BJ Bennion… - Journal of Chemical …, 2023 - ACS Publications
Protein–ligand interactions are essential to drug discovery and drug development efforts.
Desirable on-target or multitarget interactions are the first step in finding an effective …
Desirable on-target or multitarget interactions are the first step in finding an effective …
Scalable composition and analysis techniques for massive scientific workflows
Composite science workflows are gaining traction to manage the combined effects of (1)
extreme hardware heterogeneity in new High Performance Computing (HPC) systems and …
extreme hardware heterogeneity in new High Performance Computing (HPC) systems and …
Step** Back to SMILES transformers for fast molecular representation inference
In the intersection of molecular science and deep learning, tasks like virtual screening have
driven the need for a high-throughput molecular representation generator on large chemical …
driven the need for a high-throughput molecular representation generator on large chemical …
[HTML][HTML] Evaluating point-prediction uncertainties in neural networks for protein-ligand binding prediction
Neural Network (NN) models provide potential to speed up the drug discovery process and
reduce its failure rates. The success of NN models requires uncertainty quantification (UQ) …
reduce its failure rates. The success of NN models requires uncertainty quantification (UQ) …
Masked molecule modeling: a new paradigm of molecular representation learning for chemistry understanding
Molecular representation learning is essential to deep learning for chemistry, where the
molecules are embedded into continuous real-valued vectors as better representations in …
molecules are embedded into continuous real-valued vectors as better representations in …