Structural variation in the sequencing era

SS Ho, AE Urban, RE Mills - Nature Reviews Genetics, 2020 - nature.com
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …

Genetic etiology and clinical challenges of phenylketonuria

NA Elhawary, IA AlJahdali, IS Abumansour… - Human genomics, 2022 - Springer
This review discusses the epidemiology, pathophysiology, genetic etiology, and
management of phenylketonuria (PKU). PKU, an autosomal recessive disease, is an inborn …

A structural variation reference for medical and population genetics

RL Collins, H Brand, KJ Karczewski, X Zhao, J Alföldi… - Nature, 2020 - nature.com
Structural variants (SVs) rearrange large segments of DNA and can have profound
consequences in evolution and human disease,. As national biobanks, disease-association …

Multi-platform discovery of haplotype-resolved structural variation in human genomes

MJP Chaisson, AD Sanders, X Zhao, A Malhotra… - Nature …, 2019 - nature.com
The incomplete identification of structural variants (SVs) from whole-genome sequencing
data limits studies of human genetic diversity and disease association. Here, we apply a …

An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder

DM Werling, H Brand, JY An, MR Stone, L Zhu… - Nature …, 2018 - nature.com
Genomic association studies of common or rare protein-coding variation have established
robust statistical approaches to account for multiple testing. Here we present a comparable …

SVision: a deep learning approach to resolve complex structural variants

J Lin, S Wang, PA Audano, D Meng, JI Flores… - Nature …, 2022 - nature.com
Complex structural variants (CSVs) encompass multiple breakpoints and are often missed or
misinterpreted. We developed SVision, a deep-learning-based multi-object-recognition …

Resolving the full spectrum of human genome variation using Linked-Reads

P Marks, S Garcia, AM Barrio, K Belhocine… - Genome …, 2019 - genome.cshlp.org
Large-scale population analyses coupled with advances in technology have demonstrated
that the human genome is more diverse than originally thought. To date, this diversity has …

Dissecting the causal mechanism of X-linked dystonia-parkinsonism by integrating genome and transcriptome assembly

T Aneichyk, WT Hendriks, R Yadav, D Shin, D Gao… - Cell, 2018 - cell.com
Summary X-linked Dystonia-Parkinsonism (XDP) is a Mendelian neurodegenerative
disease that is endemic to the Philippines and is associated with a founder haplotype. We …

Mitotic clustering of pulverized chromosomes from micronuclei

YF Lin, Q Hu, A Mazzagatti, JE Valle-Inclán… - Nature, 2023 - nature.com
Complex genome rearrangements can be generated by the catastrophic pulverization of
missegregated chromosomes trapped within micronuclei through a process known as …

An integrated peach genome structural variation map uncovers genes associated with fruit traits

J Guo, K Cao, C Deng, Y Li, G Zhu, W Fang, C Chen… - Genome biology, 2020 - Springer
Abstract Background Genome structural variations (SVs) have been associated with key
traits in a wide range of agronomically important species; however, SV profiles of peach and …