Comparative analysis of core microbiome assignments: implications for ecological synthesis

GF Custer, M Gans, LTA van Diepen, F Dini-Andreote… - Msystems, 2023 - Am Soc Microbiol
The concept of a core microbiome has been broadly used to refer to the consistent presence
of a set of taxa across multiple samples within a given habitat. The assignment of taxa to …

RRPP: An r package for fitting linear models to high‐dimensional data using residual randomization

ML Collyer, DC Adams - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Residual randomization in permutation procedures (RRPP) is an appropriate means of
generating empirical sampling distributions for ANOVA statistics and linear model …

[PDF][PDF] Distance‐based multivariate analyses confound location and dispersion effects

DI Warton, ST Wright, Y Wang - Methods in Ecology and Evolution, 2012 - researchgate.net
A critical property of count data is its mean–variance relationship, yet this is rarely
considered in multivariate analysis in ecology. 2. This study considers what is being …

Predator control of marine communities increases with temperature across 115 degrees of latitude

GV Ashton, AL Freestone, JE Duffy, ME Torchin… - Science, 2022 - science.org
Early naturalists suggested that predation intensity increases toward the tropics, affecting
fundamental ecological and evolutionary processes by latitude, but empirical support is still …

A marine protected area network does not confer community structure resilience to a marine heatwave across coastal ecosystems

JG Smith, CM Free, C Lopazanski, J Brun… - Global Change …, 2023 - Wiley Online Library
Marine protected areas (MPAs) have gained attention as a conservation tool for enhancing
ecosystem resilience to climate change. However, empirical evidence explicitly linking …

Extent and reproduction of coastal species on plastic debris in the North Pacific Subtropical Gyre

LE Haram, JT Carlton, L Centurioni… - Nature Ecology & …, 2023 - nature.com
We show that the high seas are colonized by a diverse array of coastal species, which
survive and reproduce in the open ocean, contributing strongly to its floating community …

Long-term fertilisation form, level and duration affect the diversity, structure and functioning of soil microbial communities in the field

F van der Bom, I Nunes, NS Raymond… - Soil Biology and …, 2018 - Elsevier
Applications of mineral and organic fertilisers are an important agricultural practice for
improving crop yields, but these applications can also affect soil properties, as well as the …

Urban fragmentation leads to lower floral diversity, with knock-on impacts on bee biodiversity

P Theodorou, SC Herbst, B Kahnt… - Scientific Reports, 2020 - nature.com
Bees and flowering plants are two closely interacting groups of organisms. Habitat loss and
fragmentation associated with urbanisation are major threats to both partners. Yet how and …

Heritability and Functional Importance of the Setaria viridis Bacterial Seed Microbiome

CE Rodríguez, L Antonielli, B Mitter… - Phytobiomes …, 2020 - Am Phytopath Society
Seed-associated bacteria represent an important reservoir of microorganisms passed onto
progeny plants and have been postulated to be important for early plant development and …

Four principles for improved statistical ecology

G Popovic, TJ Mason, SM Drobniak… - Methods in Ecology …, 2024 - Wiley Online Library
Increasing attention has been drawn to the misuse of statistical methods over recent years,
with particular concern about the prevalence of practices such as poor experimental design …