Fighting antibiotic resistance—strategies and (pre) clinical developments to find new antibacterials

S Walesch, J Birkelbach, G Jézéquel, FPJ Haeckl… - EMBO …, 2023 - embopress.org
Antibacterial resistance is one of the greatest threats to human health. The development of
new therapeutics against bacterial pathogens has slowed drastically since the approvals of …

Mechanism of action of ribosomally synthesized and post-translationally modified peptides

C Ongpipattanakul, EK Desormeaux… - Chemical …, 2022 - ACS Publications
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a natural
product class that has undergone significant expansion due to the rapid growth in genome …

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation

K Blin, S Shaw, HE Augustijn, ZL Reitz… - Nucleic acids …, 2023 - academic.oup.com
Microorganisms produce small bioactive compounds as part of their secondary or
specialised metabolism. Often, such metabolites have antimicrobial, anticancer, antifungal …

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

BR Terlouw, K Blin, JC Navarro-Munoz… - Nucleic acids …, 2023 - academic.oup.com
With an ever-increasing amount of (meta) genomic data being deposited in sequence
databases,(meta) genome mining for natural product biosynthetic pathways occupies a …

Artificial intelligence for natural product drug discovery

MW Mullowney, KR Duncan, SS Elsayed… - Nature Reviews Drug …, 2023 - nature.com
Developments in computational omics technologies have provided new means to access
the hidden diversity of natural products, unearthing new potential for drug discovery. In …

The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more

K Blin, S Shaw, MH Medema, T Weber - Nucleic acids research, 2024 - academic.oup.com
Many microorganisms produce natural products that are frequently used in the development
of medicines and crop protection agents. Genome mining has evolved into a prominent …

Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes

X Zhang, YN Ma, X Wang, K Liao, S He, X Zhao, H Guo… - Microbiome, 2022 - Springer
Background Plants and their associated microbiota constitute an assemblage of species
known as holobionts. The plant seed microbiome plays an important role in nutrient uptake …

Expanding chemistry through in vitro and in vivo biocatalysis

EN Kissman, MB Sosa, DC Millar, EJ Koleski… - Nature, 2024 - nature.com
Living systems contain a vast network of metabolic reactions, providing a wealth of enzymes
and cells as potential biocatalysts for chemical processes. The properties of protein and cell …

Evolution-inspired engineering of nonribosomal peptide synthetases

KAJ Bozhüyük, L Präve, C Kegler, L Schenk, S Kaiser… - Science, 2024 - science.org
Many clinically used drugs are derived from or inspired by bacterial natural products that
often are produced through nonribosomal peptide synthetases (NRPSs), megasynthetases …