The COSMIC Cancer Gene Census: describing genetic dysfunction across all human cancers

Z Sondka, S Bamford, CG Cole, SA Ward… - Nature Reviews …, 2018 - nature.com
Abstract The Catalogue of Somatic Mutations in Cancer (COSMIC) Cancer Gene Census
(CGC) is an expert-curated description of the genes driving human cancer that is used as a …

[HTML][HTML] The world of protein acetylation

A Drazic, LM Myklebust, R Ree, T Arnesen - Biochimica et Biophysica Acta …, 2016 - Elsevier
Acetylation is one of the major post-translational protein modifications in the cell, with
manifold effects on the protein level as well as on the metabolome level. The acetyl group …

SHP2 as a primordial epigenetic enzyme expunges histone H3 pTyr-54 to amend androgen receptor homeostasis

S Chouhan, D Sridaran, C Weimholt, J Luo, T Li… - Nature …, 2024 - nature.com
Mutations that decrease or increase the activity of the tyrosine phosphatase, SHP2 (encoded
by PTPN11), promotes developmental disorders and several malignancies by varying …

Functions of site-specific histone acetylation and deacetylation

MD Shahbazian, M Grunstein - Annu. Rev. Biochem., 2007 - annualreviews.org
Histone acetylation regulates many cellular processes, and specific acetylation marks, either
singly or in combination, produce distinct outcomes. For example, the acetylation pattern on …

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina

JM Zullo, IA Demarco, R Piqué-Regi, DJ Gaffney… - Cell, 2012 - cell.com
A large fraction of the mammalian genome is organized into inactive chromosomal domains
along the nuclear lamina. The mechanism by which these lamina associated domains …

Regulation of LSD1 histone demethylase activity by its associated factors

YJ Shi, C Matson, F Lan, S Iwase, T Baba, Y Shi - Molecular cell, 2005 - cell.com
LSD1 is a recently identified human lysine (K)-specific histone demethylase. LSD1 is
associated with HDAC1/2; CoREST, a SANT domain-containing corepressor; and BHC80, a …

An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation

MG Lee, C Wynder, N Cooch, R Shiekhattar - Nature, 2005 - nature.com
We have previously described a multiprotein complex termed the BHC or BRAF–HDAC
complex, which is required for the repression of neuronal-specific genes. We have shown …

Integrative regulation of physiology by histone deacetylase 3

MJ Emmett, MA Lazar - Nature reviews Molecular cell biology, 2019 - nature.com
Cell-type-specific gene expression is physiologically modulated by the binding of
transcription factors to genomic enhancer sequences, to which chromatin modifiers such as …

Structure and function insights into the NuRD chromatin remodeling complex

MP Torchy, A Hamiche, BP Klaholz - Cellular and Molecular Life Sciences, 2015 - Springer
Transcription regulation through chromatin compaction and decompaction is regulated
through various chromatin-remodeling complexes such as nucleosome remodeling and …

The SANT domain: a unique histone-tail-binding module?

LA Boyer, RR Latek, CL Peterson - Nature reviews Molecular cell …, 2004 - nature.com
Chromatin-remodelling complexes have an important role in all DNA-mediated processes
and, although much is known about how these enzymes regulate chromosomal DNA …