Systematic exploration of protein conformational space using a distance geometry approach
The optimization approaches classically used during the determination of protein structure
encounter various difficulties, especially when the size of the conformational space is large …
encounter various difficulties, especially when the size of the conformational space is large …
Low-resolution description of the conformational space for intrinsically disordered proteins
Intrinsically disordered proteins (IDP) are at the center of numerous biological processes,
and attract consequently extreme interest in structural biology. Numerous approaches have …
and attract consequently extreme interest in structural biology. Numerous approaches have …
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures
In the 2 years since our last 4OR review of distance geometry methods with applications to
proteins and nanostructures, there has been rapid progress in treating uncertainties in the …
proteins and nanostructures, there has been rapid progress in treating uncertainties in the …
Tandem domain structure determination based on a systematic enumeration of conformations
TE Malliavin - Scientific Reports, 2021 - nature.com
Protein structure determination is undergoing a change of perspective due to the larger
importance taken in biology by the disordered regions of biomolecules. In such cases, the …
importance taken in biology by the disordered regions of biomolecules. In such cases, the …
Oriented conformal geometric algebra and the molecular distance geometry problem
The problem of 3D protein structure determination using distance information from nuclear
magnetic resonance (NMR) experiments is a classical problem in distance geometry. NMR …
magnetic resonance (NMR) experiments is a classical problem in distance geometry. NMR …
Influence of stereochemistry in a local approach for calculating protein conformations
Protein structure prediction is generally based on the use of local conformational information
coupled with long-range distance restraints. Such restraints can be derived from the …
coupled with long-range distance restraints. Such restraints can be derived from the …
Linear and geometric algebra approaches for sphere and spherical shell intersections in Rn
Many practical problems involve sphere intersections. Examples include but are not limited
to estimations using the Global Positioning System (GPS), data science applications and 3D …
to estimations using the Global Positioning System (GPS), data science applications and 3D …
[HTML][HTML] On the estimation of unknown distances for a class of Euclidean distance matrix completion problems with interval data
We consider some Euclidean distance matrix completion problems whose structure is
inspired by molecular conformation problems. Some matrix distances are given precisely or …
inspired by molecular conformation problems. Some matrix distances are given precisely or …
A quantum approach to the discretizable molecular distance geometry problem
Abstract The Discretizable Molecular Distance Geometry Problem (DMDGP) aims to
determine the three-dimensional protein structure using distance information from nuclear …
determine the three-dimensional protein structure using distance information from nuclear …
A Study on the Covalent Geometry of Proteins and Its Impact on Distance Geometry
Abstract The Distance Geometry Problem (DGP) involves determining the positions of a set
of points in space based on the distances between them. Due to the importance of …
of points in space based on the distances between them. Due to the importance of …