Patterns and processes of microbial community assembly

DR Nemergut, SK Schmidt, T Fukami… - Microbiology and …, 2013 - Am Soc Microbiol
Recent research has expanded our understanding of microbial community assembly.
However, the field of community ecology is inaccessible to many microbial ecologists …

Marine viruses—major players in the global ecosystem

CA Suttle - Nature reviews microbiology, 2007 - nature.com
Viruses are by far the most abundant'lifeforms' in the oceans and are the reservoir of most of
the genetic diversity in the sea. The estimated 1030 viruses in the ocean, if stretched end to …

Rapid evolutionary turnover of mobile genetic elements drives bacterial resistance to phages

FA Hussain, J Dubert, J Elsherbini, M Murphy… - Science, 2021 - science.org
Although it is generally accepted that phages drive bacterial evolution, how these dynamics
play out in the wild remains poorly understood. We found that susceptibility to viral killing in …

Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation

CS Smillie, J Sauk, D Gevers, J Friedman, J Sung… - Cell host & …, 2018 - cell.com
Fecal microbiota transplantation (FMT) from healthy donor to patient is a treatment for
microbiome-associated diseases. Although the success of FMT requires donor bacteria to …

Phage–host coevolution in natural populations

D Piel, M Bruto, Y Labreuche, F Blanquart… - Nature …, 2022 - nature.com
Coevolution between bacteriophages (phages) and their bacterial hosts occurs through
changes in resistance and counter-resistance mechanisms. To assess phage–host …

Oligoty**: differentiating between closely related microbial taxa using 16S rRNA gene data

AM Eren, L Maignien, WJ Sul… - Methods in ecology …, 2013 - Wiley Online Library
Bacteria comprise the most diverse domain of life on Earth, where they occupy nearly every
possible ecological niche and play key roles in biological and chemical processes. Studying …

Resolving the structure of phage–bacteria interactions in the context of natural diversity

KM Kauffman, WK Chang, JM Brown… - Nature …, 2022 - nature.com
Microbial communities are shaped by viral predators. Yet, resolving which viruses (phages)
and bacteria are interacting is a major challenge in the context of natural levels of microbial …

The microbial pan-genome

D Medini, C Donati, H Tettelin, V Masignani… - Current opinion in …, 2005 - Elsevier
A decade after the beginning of the genomic era, the question of how genomics can
describe a bacterial species has not been fully addressed. Experimental data have shown …

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

DB Rusch, AL Halpern, G Sutton, KB Heidelberg… - PLoS …, 2007 - journals.plos.org
The world's oceans contain a complex mixture of micro-organisms that are for the most part,
uncharacterized both genetically and biochemically. We report here a metagenomic study of …

Oligoty** analysis of the human oral microbiome

AM Eren, GG Borisy, SM Huse… - Proceedings of the …, 2014 - National Acad Sciences
The Human Microbiome Project provided a census of bacterial populations in healthy
individuals, but an understanding of the biomedical significance of this census has been …