Biclustering data analysis: a comprehensive survey

EN Castanho, H Aidos, SC Madeira - Briefings in Bioinformatics, 2024 - academic.oup.com
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …

Metaheuristic biclustering algorithms: from state-of-the-art to future opportunities

A José-García, J Jacques, V Sobanski… - ACM Computing …, 2023 - dl.acm.org
Biclustering is an unsupervised machine-learning technique that simultaneously clusters
rows and columns in a data matrix. Over the past two decades, the field of biclustering has …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

[HTML][HTML] A reinforcement learning recommender system using bi-clustering and Markov Decision Process

A Iftikhar, MA Ghazanfar, M Ayub, SA Alahmari… - Expert Systems with …, 2024 - Elsevier
Collaborative filtering (CF) recommender systems are static in nature and does not adapt
well with changing user preferences. User preferences may change after interaction with a …

Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery

H López-Fernández, HM Santos, JL Capelo… - BMC …, 2015 - Springer
Background Mass spectrometry is one of the most important techniques in the field of
proteomics. MALDI-TOF mass spectrometry has become popular during the last decade due …

Reinforcement learning based recommender system using biclustering technique

S Choi, H Ha, U Hwang, C Kim, JW Ha… - arxiv preprint arxiv …, 2018 - arxiv.org
A recommender system aims to recommend items that a user is interested in among many
items. The need for the recommender system has been expanded by the information …

Biclustering algorithms based on metaheuristics: a review

A José-García, J Jacques, V Sobanski… - … for machine learning …, 2022 - Springer
Biclustering is an unsupervised machine learning technique that simultaneously clusters
rows and columns in a data matrix. Biclustering has emerged as an important approach and …

Sma3s: a three-step modular annotator for large sequence datasets

A Munoz-Mérida, E Viguera, MG Claros… - DNA …, 2014 - academic.oup.com
Automatic sequence annotation is an essential component of modern 'omics' studies, which
aim to extract information from large collections of sequence data. Most existing tools use …

iBBiG: iterative binary bi-clustering of gene sets

D Gusenleitner, EA Howe, S Bentink… - …, 2012 - academic.oup.com
Motivation: Meta-analysis of genomics data seeks to identify genes associated with a
biological phenotype across multiple datasets; however, merging data from different …

A binary biclustering algorithm based on the adjacency difference matrix for gene expression data analysis

HM Chu, JX Liu, K Zhang, CH Zheng, J Wang… - BMC …, 2022 - Springer
Biclustering algorithm is an effective tool for processing gene expression datasets. There are
two kinds of data matrices, binary data and non-binary data, which are processed by …