[HTML][HTML] The role and potential of computer-aided drug discovery strategies in the discovery of novel antimicrobials

SO Oselusi, P Dube, AI Odugbemi, KA Akinyede… - Computers in biology …, 2024 - Elsevier
Antimicrobial resistance (AMR) has become more of a concern in recent decades,
particularly in infections associated with global public health threats. The development of …

Curcumin-Incorporated Biomaterials: In silico and in vitro evaluation of biological potentials

NA Torbat, I Akbarzadeh, N Rezaei… - Coordination Chemistry …, 2023 - Elsevier
Curcumin (diferuloylmethane) is the main constituent extracted from turmeric. This
polyphenol is a non-toxic, potent compound with anticancer, anti-inflammatory, antibacterial …

NHGNN-DTA: a node-adaptive hybrid graph neural network for interpretable drug–target binding affinity prediction

H He, G Chen, CYC Chen - Bioinformatics, 2023 - academic.oup.com
Motivation Large-scale prediction of drug–target affinity (DTA) plays an important role in
drug discovery. In recent years, machine learning algorithms have made great progress in …

SARS-CoV2 billion-compound docking

DM Rogers, R Agarwal, JV Vermaas, MD Smith… - Scientific Data, 2023 - nature.com
This dataset contains ligand conformations and docking scores for 1.4 billion molecules
docked against 6 structural targets from SARS-CoV2, representing 5 unique proteins: MPro …

[HTML][HTML] Spectroscopic (FT-IR, FT-Raman, NMR and UV–visible), ADMET and molecular docking investigation of aztreonam as anti-tuberculosis agent

N Mani, S Suresh, M Govindammal, S Kannan… - Chemical Physics …, 2023 - Elsevier
Abstract The FT-IR and FT-Raman spectra was recorded within the range of 4000-500 cm−
1 and compared with the theoretically obtained spectra. The 13 C and 1 H NMR chemical …

A comprehensive insight into the effects of caffeic acid (CA) on pepsin: Multi-spectroscopy and MD simulations methods

F Hashemi-Shahraki, B Shareghi, S Farhadian… - … Acta Part A: Molecular …, 2023 - Elsevier
The interaction between caffeic acid (CA) and pepsin was investigated using multi-
spectroscopy approaches and molecular dynamic simulations (MDS). The effects of CA on …

Structure-based screening of FDA-approved drugs identifies potential histone deacetylase 3 repurposed inhibitor: molecular docking and molecular dynamic …

A Shamsi, MS Khan, DK Yadav… - Frontiers in …, 2024 - frontiersin.org
Histone deacetylase 3 (HDAC3) is a member of the histone deacetylase family that has
emerged as a crucial target in the quest for novel therapeutic interventions against various …

BINDTI: a bi-directional intention network for drug-target interaction identification based on attention mechanisms

L Peng, X Liu, L Yang, L Liu, Z Bai… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
The identification of drug-target interactions (DTIs) is an essential step in drug discovery. In
vitro experimental methods are expensive, laborious, and time-consuming. Deep learning …

Molecular structure, vibrational spectral, electron density analysis on linaloe oil and molecular docking efficacy against the therapeutic target on human …

CU Maheswari - Heliyon, 2024 - cell.com
Natural traditional medicine extensively uses certain terpenes and gives plants their flavor,
aroma, and color. Treatments for bacterial infections, malaria, and cardiovascular disorders …

The role of S477N mutation in the molecular behavior of SARS‐CoV‐2 spike protein: An in‐silico perspective

M Mondeali, A Etemadi, K Barkhordari… - Journal of Cellular …, 2023 - Wiley Online Library
The attachment of SARA‐CoV‐2 happens between ACE2 and the receptor binding domain
(RBD) on the spike protein. Mutations in this domain can affect the binding affinity of the …