A survey of link prediction in complex networks

V Martínez, F Berzal, JC Cubero - ACM computing surveys (CSUR), 2016 - dl.acm.org
Networks have become increasingly important to model complex systems composed of
interacting elements. Network data mining has a large number of applications in many …

Artificial intelligence and machine learning approaches for drug design: challenges and opportunities for the pharmaceutical industries

C Selvaraj, I Chandra, SK Singh - Molecular diversity, 2021 - Springer
The global spread of COVID-19 has raised the importance of pharmaceutical drug
development as intractable and hot research. Develo** new drug molecules to overcome …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Labeling trick: A theory of using graph neural networks for multi-node representation learning

M Zhang, P Li, Y **a, K Wang… - Advances in Neural …, 2021 - proceedings.neurips.cc
In this paper, we provide a theory of using graph neural networks (GNNs) for multi-node
representation learning (where we are interested in learning a representation for a set of …

An investigation of feature selection methods for soil liquefaction prediction based on tree-based ensemble algorithms using AdaBoost, gradient boosting, and …

S Demir, EK Sahin - Neural Computing and Applications, 2023 - Springer
Previous major earthquake events have revealed that soils susceptible to liquefaction are
one of the factors causing significant damages to the structures. Therefore, accurate …

[PDF][PDF] On dyadic fairness: Exploring and mitigating bias in graph connections

P Li, Y Wang, H Zhao, P Hong, H Liu - International Conference on …, 2021 - par.nsf.gov
Disparate impact has raised serious concerns in machine learning applications and its
societal impacts. In response to the need of mitigating discrimination, fairness has been …

LightGBM-PPI: Predicting protein-protein interactions through LightGBM with multi-information fusion

C Chen, Q Zhang, Q Ma, B Yu - Chemometrics and Intelligent Laboratory …, 2019 - Elsevier
Protein-protein interactions (PPIs) play an important role in cell life activities such as
transcriptional regulation, signal transduction and drug signal transduction. The study of …

Random forest for bioinformatics

Y Qi - Ensemble machine learning: Methods and applications, 2012 - Springer
Modern biology has experienced an increased use of machine learning techniques for large
scale and complex biological data analysis. In the area of Bioinformatics, the Random Forest …

An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests.

C Strobl, J Malley, G Tutz - Psychological methods, 2009 - psycnet.apa.org
Recursive partitioning methods have become popular and widely used tools for
nonparametric regression and classification in many scientific fields. Especially random …

Bias in random forest variable importance measures: Illustrations, sources and a solution

C Strobl, AL Boulesteix, A Zeileis, T Hothorn - BMC bioinformatics, 2007 - Springer
Background Variable importance measures for random forests have been receiving
increased attention as a means of variable selection in many classification tasks in …