Twenty years of plant genome sequencing: achievements and challenges
Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …
reference genome, in December 2000 heralded the beginning of the plant genome era …
Cucurbitaceae genome evolution, gene function, and molecular breeding
L Ma, Q Wang, Y Zheng, J Guo, S Yuan… - Horticulture …, 2022 - academic.oup.com
Cucurbitaceae is one of the most genetically diverse plant families in the world. Many of
them are important vegetables or medicinal plants and are widely distributed worldwide. The …
them are important vegetables or medicinal plants and are widely distributed worldwide. The …
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar 'Feizixiao'was
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding
Y Deng, S Liu, Y Zhang, J Tan, X Li, X Chu, B Xu… - Molecular plant, 2022 - cell.com
Watermelon, Citrullus lanatus, is the world's third largest fruit crop. Reference genomes with
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
Structural variants (SVs) represent a major source of genetic diversity and are related to
numerous agronomic traits and evolutionary events; however, their comprehensive …
numerous agronomic traits and evolutionary events; however, their comprehensive …
Green plant genomes: What we know in an era of rapidly expanding opportunities
Green plants play a fundamental role in ecosystems, human health, and agriculture. As de
novo genomes are being generated for all known eukaryotic species as advocated by the …
novo genomes are being generated for all known eukaryotic species as advocated by the …
CuGenDBv2: an updated database for cucurbit genomics
The Cucurbitaceae (cucurbit) family consists of about 1,000 species in 95 genera, including
many economically important and popular fruit and vegetable crops. During the past several …
many economically important and popular fruit and vegetable crops. During the past several …
Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding
To decipher the genetic diversity within the cucurbit genus Citrullus, we generated telomere-
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …
individual laboratories. The low costs and increasing efficiency of sequencing technologies …
Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations
J Guo, W Xu, Y Hu, J Huang, Y Zhao, L Zhang… - Molecular Plant, 2020 - cell.com
The ability of climbing plants to grow upward along others to reach the canopy for
photosynthesis is hypothesized as a key innovation in flowering plants. Most members of the …
photosynthesis is hypothesized as a key innovation in flowering plants. Most members of the …