Drug–Drug Interaction Relation Extraction Based on Deep Learning: A Review

M Dou, J Tang, P Tiwari, Y Ding, F Guo - ACM Computing Surveys, 2024 - dl.acm.org
Drug–drug interaction (DDI) is an important part of drug development and
pharmacovigilance. At the same time, DDI is an important factor in treatment planning …

SRR-DDI: A drug–drug interaction prediction model with substructure refined representation learning based on self-attention mechanism

D Niu, L Xu, S Pan, L **a, Z Li - Knowledge-Based Systems, 2024 - Elsevier
Drug–drug interaction (DDI) is an important safety issue during clinical treatment, where the
mechanism of action of drugs may interfere with each other thereby causing adverse effects …

BBL-GAT: a novel method for drug-drug interaction extraction from biomedical literature

Y Jia, Z Yuan, H Wang, Y Gong, H Yang… - IEEE Access, 2024 - ieeexplore.ieee.org
The identification of Drug-Drug Interactions (DDIs) is crucial for optimizing patient treatment
and avoiding adverse reactions. With the rapid growth of biomedical literature, manual …

Graph Representation Learning for Interactive Biomolecule Systems

X **ong, B Zhou, YG Wang - arxiv preprint arxiv:2304.02656, 2023 - arxiv.org
Advances in deep learning models have revolutionized the study of biomolecule systems
and their mechanisms. Graph representation learning, in particular, is important for …

EMSI-BERT: Asymmetrical entity-mask strategy and symbol-insert structure for drug–drug interaction extraction based on BERT

Z Huang, N An, J Liu, F Ren - Symmetry, 2023 - mdpi.com
Drug-drug interaction (DDI) extraction has seen growing usage of deep models, but their
effectiveness has been restrained by limited domain-labeled data, a weak representation of …

[HTML][HTML] EDDINet: Enhancing drug–drug interaction prediction via information flow and consensus constrained multi-graph contrastive learning

H Wang, L Zhuang, Y Ding, P Tiwari, C Liang - Artificial Intelligence in …, 2025 - Elsevier
Predicting drug–drug interactions (DDIs) is crucial for understanding and preventing
adverse drug reactions (ADRs). However, most existing methods inadequately explore the …

Reading comprehension powered semantic fusion network for identification of N-ary drug combinations

H Zhang, P Zhan, C Yang, Y Yan, Z Cai, G Shan… - … Applications of Artificial …, 2025 - Elsevier
The concurrent use of multiple medications to treat one or more diseases is prevalent.
Identifying N-ary drug combinations from biomedical texts aids in uncovering significant …

[HTML][HTML] EGeRepDR: An enhanced genetic-based representation learning for drug repurposing using multiple biomedical sources

S Muniyappan, AXA Rayan, GT Varrieth - Journal of Biomedical Informatics, 2023 - Elsevier
Motivation Drug repurposing (DR) is an imminent approach for identifying novel therapeutic
indications for the available drugs and discovering novel drugs for previously untreatable …

A Message Passing Approach to Biomedical Relation Classification for Drug–Drug Interactions

D Zaikis, C Karalka, I Vlahavas - Applied Sciences, 2022 - mdpi.com
Featured Application With this contribution, we aim to aid the drug development process as
well as the identification of possible adverse drug events due to simultaneous drug use …

DDI-MuG: Multi-aspect graphs for drug-drug interaction extraction

J Yang, Y Ding, S Long, J Poon, SC Han - Frontiers in Digital Health, 2023 - frontiersin.org
Introduction Drug-drug interaction (DDI) may lead to adverse reactions in patients, thus it is
important to extract such knowledge from biomedical texts. However, previously proposed …