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Multiple functions of flagellar motility and chemotaxis in bacterial physiology
Most swimming bacteria are capable of following gradients of nutrients, signaling molecules
and other environmental factors that affect bacterial physiology. This tactic behavior became …
and other environmental factors that affect bacterial physiology. This tactic behavior became …
Sha** of microbial phenotypes by trade-offs
M Zhu, X Dai - Nature Communications, 2024 - nature.com
Growth rate maximization is an important fitness strategy for microbes. However, the wide
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
Mitochondrial ATP generation is more proteome efficient than glycolysis
Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms,
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …
Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …
reproduction and co-existence. However, it remains unclear whether there are general rules …
The Warburg effect: how does it benefit cancer cells?
Cancer cells rewire their metabolism to promote growth, survival, proliferation, and long-term
maintenance. The common feature of this altered metabolism is the increased glucose …
maintenance. The common feature of this altered metabolism is the increased glucose …
[HTML][HTML] Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints
Genome‐scale metabolic models (GEM s) are widely used to calculate metabolic
phenotypes. They rely on defining a set of constraints, the most common of which is that the …
phenotypes. They rely on defining a set of constraints, the most common of which is that the …
Overflow metabolism in Escherichia coli results from efficient proteome allocation
Overflow metabolism refers to the seemingly wasteful strategy in which cells use
fermentation instead of the more efficient respiration to generate energy, despite the …
fermentation instead of the more efficient respiration to generate energy, despite the …
Constraint-based models predict metabolic and associated cellular functions
The prediction of cellular function from a genotype is a fundamental goal in biology. For
metabolism, constraint-based modelling methods systematize biochemical, genetic and …
metabolism, constraint-based modelling methods systematize biochemical, genetic and …
The cost of protein production
The economy of protein production is central to cell physiology, being intimately linked with
cell division rate and cell size. Attempts to model cellular physiology are limited by the …
cell division rate and cell size. Attempts to model cellular physiology are limited by the …
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …
of the relation between genotype and phenotype. Streamlined integration of enzyme …