Multiple functions of flagellar motility and chemotaxis in bacterial physiology

R Colin, B Ni, L Laganenka… - FEMS microbiology …, 2021 - academic.oup.com
Most swimming bacteria are capable of following gradients of nutrients, signaling molecules
and other environmental factors that affect bacterial physiology. This tactic behavior became …

Sha** of microbial phenotypes by trade-offs

M Zhu, X Dai - Nature Communications, 2024 - nature.com
Growth rate maximization is an important fitness strategy for microbes. However, the wide
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …

Mitochondrial ATP generation is more proteome efficient than glycolysis

Y Shen, HV Dinh, ER Cruz, Z Chen… - Nature chemical …, 2024 - nature.com
Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms,
from yeast to mammals, derive usable energy primarily through glycolysis and respiration …

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

T Dai, D Wen, CT Bates, L Wu, X Guo, S Liu… - Nature …, 2022 - nature.com
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …

The Warburg effect: how does it benefit cancer cells?

MV Liberti, JW Locasale - Trends in biochemical sciences, 2016 - cell.com
Cancer cells rewire their metabolism to promote growth, survival, proliferation, and long-term
maintenance. The common feature of this altered metabolism is the increased glucose …

[HTML][HTML] Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints

BJ Sánchez, C Zhang, A Nilsson… - Molecular systems …, 2017 - embopress.org
Genome‐scale metabolic models (GEM s) are widely used to calculate metabolic
phenotypes. They rely on defining a set of constraints, the most common of which is that the …

Overflow metabolism in Escherichia coli results from efficient proteome allocation

M Basan, S Hui, H Okano, Z Zhang, Y Shen… - Nature, 2015 - nature.com
Overflow metabolism refers to the seemingly wasteful strategy in which cells use
fermentation instead of the more efficient respiration to generate energy, despite the …

Constraint-based models predict metabolic and associated cellular functions

A Bordbar, JM Monk, ZA King, BO Palsson - Nature Reviews Genetics, 2014 - nature.com
The prediction of cellular function from a genotype is a fundamental goal in biology. For
metabolism, constraint-based modelling methods systematize biochemical, genetic and …

The cost of protein production

M Kafri, E Metzl-Raz, G Jona, N Barkai - Cell reports, 2016 - cell.com
The economy of protein production is central to cell physiology, being intimately linked with
cell division rate and cell size. Attempts to model cellular physiology are limited by the …

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

I Domenzain, B Sánchez, M Anton… - Nature …, 2022 - nature.com
Genome-scale metabolic models (GEMs) have been widely used for quantitative exploration
of the relation between genotype and phenotype. Streamlined integration of enzyme …