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[HTML][HTML] Deep learning for genomics: from early neural nets to modern large language models
The data explosion driven by advancements in genomic research, such as high-throughput
sequencing techniques, is constantly challenging conventional methods used in genomics …
sequencing techniques, is constantly challenging conventional methods used in genomics …
Deep learning for genomics: A concise overview
Advancements in genomic research such as high-throughput sequencing techniques have
driven modern genomic studies into" big data" disciplines. This data explosion is constantly …
driven modern genomic studies into" big data" disciplines. This data explosion is constantly …
Protein secondary structure prediction using deep convolutional neural fields
Protein secondary structure (SS) prediction is important for studying protein structure and
function. When only the sequence (profile) information is used as input feature, currently the …
function. When only the sequence (profile) information is used as input feature, currently the …
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …
helical and sheet conformations for protein polypeptide backbone even before the first …
A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction
Ab initio protein secondary structure (SS) predictions are utilized to generate tertiary
structure predictions, which are increasingly demanded due to the rapid discovery of …
structure predictions, which are increasingly demanded due to the rapid discovery of …
MUFOLD‐SS: New deep inception‐inside‐inception networks for protein secondary structure prediction
Protein secondary structure prediction can provide important information for protein 3D
structure prediction and protein functions. Deep learning offers a new opportunity to …
structure prediction and protein functions. Deep learning offers a new opportunity to …
Classification of nuclear receptors based on amino acid composition and dipeptide composition
Nuclear receptors are key transcription factors that regulate crucial gene networks
responsible for cell growth, differentiation, and homeostasis. Nuclear receptors form a …
responsible for cell growth, differentiation, and homeostasis. Nuclear receptors form a …
Small-molecule ligand docking into comparative models with Rosetta
Abstract Structure-based drug design is frequently used to accelerate the development of
small-molecule therapeutics. Although substantial progress has been made in X-ray …
small-molecule therapeutics. Although substantial progress has been made in X-ray …
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Peptide-protein interactions contribute a significant fraction of the protein-protein
interactome. Accurate modeling of these interactions is challenging due to the vast …
interactome. Accurate modeling of these interactions is challenging due to the vast …
Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
XB Zhou, C Chen, ZC Li, XY Zou - Journal of theoretical biology, 2007 - Elsevier
With the rapid increment of protein sequence data, it is indispensable to develop automated
and reliable predictive methods for protein function annotation. One approach for facilitating …
and reliable predictive methods for protein function annotation. One approach for facilitating …