[HTML][HTML] The gramicidin ion channel: a model membrane protein

DA Kelkar, A Chattopadhyay - Biochimica et Biophysica Acta (BBA) …, 2007 - Elsevier
The linear peptide gramicidin forms prototypical ion channels specific for monovalent
cations and has been extensively used to study the organization, dynamics and function of …

Modeling and simulation of ion channels

C Maffeo, S Bhattacharya, J Yoo, D Wells… - Chemical …, 2012 - ACS Publications
Transport of ions through pores in membranes is a process of fundamental importance to
cell biology. In living organisms, such transport is facilitated by ion channels that utilize the …

[KNYGA][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

[HTML][HTML] Cholesterol-induced protein sorting: an analysis of energetic feasibility

JA Lundbaek, OS Andersen, T Werge, C Nielsen - Biophysical journal, 2003 - cell.com
The mechanism (s) underlying the sorting of integral membrane proteins between the Golgi
complex and the plasma membrane remain uncertain because no specific Golgi retention …

Solution structure of the pore-forming protein of Entamoeba histolytica

O Hecht, NA Van Nuland, K Schleinkofer… - Journal of Biological …, 2004 - jbc.org
Amoebapore A is a 77-residue protein from the protozoan parasite and human pathogen
Entamoeba histolytica. Amoebapores lyse both bacteria and eukaryotic cells by pore …

Effect of Drastic Sequence Alteration and d-Amino Acid Incorporation on the Membrane Binding Behavior of Lytic Peptides

N Papo, Y Shai - Biochemistry, 2004 - ACS Publications
The amphipathic α-helix is a common motif found in many cell lytic peptides including
antimicrobial peptides. We have recently shown that significantly altering the amphipathic …

[HTML][HTML] Investigations of antimicrobial peptides in planar film systems

R Volinsky, S Kolusheva, A Berman… - Biochimica et Biophysica …, 2006 - Elsevier
Planar systems–monolayers and films–constitute a useful platform for studying membrane-
active peptides. Here, we summarize varied approaches for studying peptide organization …

Characterizing the water wire in the Gramicidin channel found by Monte Carlo sampling using continuum electrostatics and in molecular dynamics trajectories with …

Y Zhang, K Haider, D Kaur, VA Ngo, X Cai… - Journal of …, 2021 - World Scientific
Water molecules play a key role in all biochemical processes. They help define the shape of
proteins, and they are reactant or product in many reactions and are released as ligands are …

Peptides and proteins in membranes: what can we learn via computer simulations?

RG Efremov, DE Nolde, AG Konshina… - Current medicinal …, 2004 - ingentaconnect.com
Membrane and membrane-active peptides and proteins play a crucial role in numerous cell
processes, such as signaling, ion conductance, fusion, and others. Many of them act as …

[HTML][HTML] Ion channel stability of Gramicidin A in lipid bilayers: Effect of hydrophobic mismatch

I Basu, A Chattopadhyay, C Mukhopadhyay - Biochimica et Biophysica Acta …, 2014 - Elsevier
Hydrophobic mismatch which is defined as the difference between the lipid hydrophobic
thickness and the peptide hydrophobic length is known to be responsible in altering the …