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[HTML][HTML] The gramicidin ion channel: a model membrane protein
The linear peptide gramicidin forms prototypical ion channels specific for monovalent
cations and has been extensively used to study the organization, dynamics and function of …
cations and has been extensively used to study the organization, dynamics and function of …
Modeling and simulation of ion channels
Transport of ions through pores in membranes is a process of fundamental importance to
cell biology. In living organisms, such transport is facilitated by ion channels that utilize the …
cell biology. In living organisms, such transport is facilitated by ion channels that utilize the …
[KNYGA][B] Introduction to proteins: structure, function, and motion
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
[HTML][HTML] Cholesterol-induced protein sorting: an analysis of energetic feasibility
The mechanism (s) underlying the sorting of integral membrane proteins between the Golgi
complex and the plasma membrane remain uncertain because no specific Golgi retention …
complex and the plasma membrane remain uncertain because no specific Golgi retention …
Solution structure of the pore-forming protein of Entamoeba histolytica
O Hecht, NA Van Nuland, K Schleinkofer… - Journal of Biological …, 2004 - jbc.org
Amoebapore A is a 77-residue protein from the protozoan parasite and human pathogen
Entamoeba histolytica. Amoebapores lyse both bacteria and eukaryotic cells by pore …
Entamoeba histolytica. Amoebapores lyse both bacteria and eukaryotic cells by pore …
Effect of Drastic Sequence Alteration and d-Amino Acid Incorporation on the Membrane Binding Behavior of Lytic Peptides
N Papo, Y Shai - Biochemistry, 2004 - ACS Publications
The amphipathic α-helix is a common motif found in many cell lytic peptides including
antimicrobial peptides. We have recently shown that significantly altering the amphipathic …
antimicrobial peptides. We have recently shown that significantly altering the amphipathic …
[HTML][HTML] Investigations of antimicrobial peptides in planar film systems
R Volinsky, S Kolusheva, A Berman… - Biochimica et Biophysica …, 2006 - Elsevier
Planar systems–monolayers and films–constitute a useful platform for studying membrane-
active peptides. Here, we summarize varied approaches for studying peptide organization …
active peptides. Here, we summarize varied approaches for studying peptide organization …
Characterizing the water wire in the Gramicidin channel found by Monte Carlo sampling using continuum electrostatics and in molecular dynamics trajectories with …
Water molecules play a key role in all biochemical processes. They help define the shape of
proteins, and they are reactant or product in many reactions and are released as ligands are …
proteins, and they are reactant or product in many reactions and are released as ligands are …
Peptides and proteins in membranes: what can we learn via computer simulations?
Membrane and membrane-active peptides and proteins play a crucial role in numerous cell
processes, such as signaling, ion conductance, fusion, and others. Many of them act as …
processes, such as signaling, ion conductance, fusion, and others. Many of them act as …
[HTML][HTML] Ion channel stability of Gramicidin A in lipid bilayers: Effect of hydrophobic mismatch
Hydrophobic mismatch which is defined as the difference between the lipid hydrophobic
thickness and the peptide hydrophobic length is known to be responsible in altering the …
thickness and the peptide hydrophobic length is known to be responsible in altering the …