Crop phenomics and high-throughput phenoty**: past decades, current challenges, and future perspectives

W Yang, H Feng, X Zhang, J Zhang, JH Doonan… - Molecular plant, 2020 - cell.com
Since whole-genome sequencing of many crops has been achieved, crop functional
genomics studies have stepped into the big-data and high-throughput era. However …

Crop phenomics: current status and perspectives

C Zhao, Y Zhang, J Du, X Guo, W Wen, S Gu… - Frontiers in Plant …, 2019 - frontiersin.org
Reliable, automatic, multifunctional, and high-throughput phenotypic technologies are
increasingly considered important tools for rapid advancement of genetic gain in breeding …

Automated identification of northern leaf blight-infected maize plants from field imagery using deep learning

C DeChant, T Wiesner-Hanks, S Chen… - …, 2017 - Am Phytopath Society
Northern leaf blight (NLB) can cause severe yield loss in maize; however, scouting large
areas to accurately diagnose the disease is time consuming and difficult. We demonstrate a …

Big data: A survey

M Chen, S Mao, Y Liu - Mobile networks and applications, 2014 - Springer
In this paper, we review the background and state-of-the-art of big data. We first introduce
the general background of big data and review related technologies, such as could …

JBrowse: a dynamic web platform for genome visualization and analysis

R Buels, E Yao, CM Diesh, RD Hayes, M Munoz-Torres… - Genome biology, 2016 - Springer
Background JBrowse is a fast and full-featured genome browser built with JavaScript and
HTML5. It is easily embedded into websites or apps but can also be served as a standalone …

Lights, camera, action: high-throughput plant phenoty** is ready for a close-up

N Fahlgren, MA Gehan, I Baxter - Current opinion in plant biology, 2015 - Elsevier
Highlights•State of high-throughput imaging technologies.•Highlights of Maker-type
phenoty** technologies.•Table of well-curated publically available high-throughput …

Genome annotation and curation using MAKER and MAKER‐P

MS Campbell, C Holt, B Moore… - Current protocols in …, 2014 - Wiley Online Library
This unit describes how to use the genome annotation and curation tools MAKER and
MAKER‐P to annotate protein‐coding and noncoding RNA genes in newly assembled …

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models

L Tung Ho, C Ané - Systematic biology, 2014 - academic.oup.com
We developed a linear-time algorithm applicable to a large class of trait evolution models,
for efficient likelihood calculations and parameter inference on very large trees. Our …

[HTML][HTML] Conducting a microbiome study

JK Goodrich, SC Di Rienzi, AC Poole, O Koren… - Cell, 2014 - cell.com
Human microbiome research is an actively develo** area of inquiry, with ramifications for
our lifestyles, our interactions with microbes, and how we treat disease. Advances depend …

VirSorter: mining viral signal from microbial genomic data

S Roux, F Enault, BL Hurwitz, MB Sullivan - PeerJ, 2015 - peerj.com
Viruses of microbes impact all ecosystems where microbes drive key energy and substrate
transformations including the oceans, humans and industrial fermenters. However, despite …