The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Abstract Analysis of environmental DNA is increasingly used to characterize ecological
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
Upscaling biodiversity monitoring: Metabarcoding estimates 31,846 insect species from Malaise traps across Germany
Mitigating ongoing losses of insects and their key functions (eg pollination) requires tracking
large‐scale and long‐term community changes. However, doing so has been hindered by …
large‐scale and long‐term community changes. However, doing so has been hindered by …
Metagenomics versus total RNA sequencing: most accurate data-processing tools, microbial identification accuracy and perspectives for ecological assessments
Metagenomics and total RNA sequencing (total RNA-Seq) have the potential to improve the
taxonomic identification of diverse microbial communities, which could allow for the …
taxonomic identification of diverse microbial communities, which could allow for the …
Metagenomic analysis using phylogenetic placement—a review of the first decade
Phylogenetic placement refers to a family of tools and methods to analyze, visualize, and
interpret the tsunami of metagenomic sequencing data generated by high-throughput …
interpret the tsunami of metagenomic sequencing data generated by high-throughput …
crabs—A software program to generate curated reference databases for metabarcoding sequencing data
The measurement of biodiversity is an integral aspect of life science research. With the
establishment of second‐and third‐generation sequencing technologies, an increasing …
establishment of second‐and third‐generation sequencing technologies, an increasing …
Comparative environmental RNA and DNA metabarcoding analysis of river algae and arthropods for ecological surveys and water quality assessment
K Miyata, Y Inoue, Y Amano, T Nishioka, T Nagaike… - Scientific Reports, 2022 - nature.com
Environmental DNA (eDNA) metabarcoding is widely used for species analysis, while the
use of environmental RNA (eRNA) metabarcoding is more limited. We conducted …
use of environmental RNA (eRNA) metabarcoding is more limited. We conducted …
Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation
Metabarcoding of DNA extracted from community samples of whole organisms (whole
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …
COInr and mkCOInr: Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi‐automated pipeline
E Meglécz - Molecular Ecology Resources, 2023 - Wiley Online Library
Reference databases with wide taxonomic coverage are greatly needed in many fields of
biology, most particularly for the taxonomic assignment of metabarcoding sequences …
biology, most particularly for the taxonomic assignment of metabarcoding sequences …