Long non-coding RNAs: definitions, functions, challenges and recommendations

JS Mattick, PP Amaral, P Carninci… - … reviews Molecular cell …, 2023 - nature.com
Genes specifying long non-coding RNAs (lncRNAs) occupy a large fraction of the genomes
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …

Long-range enhancer–promoter contacts in gene expression control

S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …

Diversity and emerging roles of enhancer RNA in regulation of gene expression and cell fate

PR Arnold, AD Wells, XC Li - Frontiers in cell and developmental …, 2020 - frontiersin.org
Enhancers are cis-regulatory elements in the genome that cooperate with promoters to
control target gene transcription. Unlike promoters, enhancers are not necessarily adjacent …

Enhancer grammar in development, evolution, and disease: dependencies and interplay

GA **dal, EK Farley - Developmental cell, 2021 - cell.com
Each language has standard books describing that language's grammatical rules. Biologists
have searched for similar, albeit more complex, principles relating enhancer sequence to …

Decoding enhancer complexity with machine learning and high-throughput discovery

GD Smith, WH Ching, P Cornejo-Páramo, ES Wong - Genome biology, 2023 - Springer
Enhancers are genomic DNA elements controlling spatiotemporal gene expression. Their
flexible organization and functional redundancies make deciphering their sequence-function …

Techniques for investigating lncRNA transcript functions in neurodevelopment

T Srinivas, E Siqueira, S Guil - Molecular Psychiatry, 2024 - nature.com
Long noncoding RNAs (lncRNAs) are sequences of 200 nucleotides or more that are
transcribed from a large portion of the mammalian genome. While hypothesized to have a …

[BOOK][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

BET inhibition disrupts transcription but retains enhancer-promoter contact

NT Crump, E Ballabio, L Godfrey, R Thorne… - Nature …, 2021 - nature.com
Enhancers are DNA sequences that enable complex temporal and tissue-specific regulation
of genes in higher eukaryotes. Although it is not entirely clear how enhancer-promoter …

RNA-binding proteins as important regulators of long non-coding RNAs in cancer

K Jonas, GA Calin, M Pichler - International journal of molecular sciences, 2020 - mdpi.com
The majority of the genome is transcribed into pieces of non-(protein) coding RNA, among
which long non-coding RNAs (lncRNAs) constitute a large group of particularly versatile …

A lncRNA-SWI/SNF complex crosstalk controls transcriptional activation at specific promoter regions

E Grossi, I Raimondi, E Goñi, J González… - Nature …, 2020 - nature.com
LncRNAs have been shown to be direct players in chromatin regulation, but little is known
about their role at active genomic loci. We investigate the role of lncRNAs in gene activation …