[HTML][HTML] Computational methods in drug discovery

SP Leelananda, S Lindert - Beilstein journal of organic …, 2016 - beilstein-journals.org
The process for drug discovery and development is challenging, time consuming and
expensive. Computer-aided drug discovery (CADD) tools can act as a virtual shortcut …

Strategies of targeting CK2 in drug discovery: challenges, opportunities, and emerging prospects

Y Chen, Y Wang, J Wang, Z Zhou, S Cao… - Journal of Medicinal …, 2023 - ACS Publications
CK2 (casein kinase 2) is a serine/threonine protein kinase that is ubiquitous in eukaryotic
cells and plays important roles in a variety of cellular functions, including cell growth …

Automated comparative protein structure modeling with SWISS‐MODEL and Swiss‐PdbViewer: A historical perspective

N Guex, MC Peitsch, T Schwede - Electrophoresis, 2009 - Wiley Online Library
SWISS‐MODEL pioneered the field of automated modeling as the first protein modeling
service on the Internet. In combination with the visualization tool Swiss‐PdbViewer, the …

Docking and scoring in virtual screening for drug discovery: methods and applications

DB Kitchen, H Decornez, JR Furr… - Nature reviews Drug …, 2004 - nature.com
Computational approaches that'dock'small molecules into the structures of macromolecular
targets and'score'their potential complementarity to binding sites are widely used in hit …

The SWISS-MODEL Repository and associated resources

F Kiefer, K Arnold, M Künzli, L Bordoli… - Nucleic acids …, 2009 - academic.oup.com
Abstract SWISS-MODEL Repository (http://swissmodel. expasy. org/repository/) is a
database of 3D protein structure models generated by the SWISS-MODEL homology …

Current applications of Suzuki–Miyaura coupling reaction in the total synthesis of natural products: an update

A Taheri Kal Koshvandi, MM Heravi… - Applied …, 2018 - Wiley Online Library
Suzuki‐Miyaura Coupling Reaction (SMCR) has been extensively used in the total synthesis
of natural products. We underscored these achievements in a report published in …

Optimizing fragment and scaffold docking by use of molecular interaction fingerprints

G Marcou, D Rognan - Journal of chemical information and …, 2007 - ACS Publications
Protein− ligand interaction fingerprints have been used to postprocess docking poses of
three ligand data sets: a set of 40 low-molecular-weight compounds from the Protein Data …

Discovery and SAR of 5-(3-Chlorophenylamino)benzo[c][2,6]naphthyridine-8-carboxylic Acid (CX-4945), the First Clinical Stage Inhibitor of Protein Kinase CK2 for the …

F Pierre, PC Chua, SE O'Brien… - Journal of medicinal …, 2011 - ACS Publications
Herein we chronicle the discovery of CX-4945 (25n), a first-in-class, orally bioavailable ATP-
competitive inhibitor of protein kinase CK2 in clinical trials for cancer. CK2 has long been …

Exploring biology with small organic molecules

BR Stockwell - Nature, 2004 - nature.com
Small organic molecules have proven to be invaluable tools for investigating biological
systems, but there is still much to learn from their use. To discover and to use more …

Validation and use of the MM-PBSA approach for drug discovery

B Kuhn, P Gerber, T Schulz-Gasch… - Journal of medicinal …, 2005 - ACS Publications
The MM-PBSA approach has become a popular method for calculating binding affinities of
biomolecular complexes. Published application examples focus on small test sets and few …