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CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
Genome biology, 2024 - Springer
Abstract Background The Critical Assessment of Genome Interpretation (CAGI) aims to
advance the state-of-the-art for computational prediction of genetic variant impact …
advance the state-of-the-art for computational prediction of genetic variant impact …
Genome interpretation using in silico predictors of variant impact
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …
personalized therapeutic opportunities. Clinical associations and laboratory experiments …
Deep mutational scanning reveals a correlation between degradation and toxicity of thousands of aspartoacylase variants
M Grønbæk-Thygesen, V Voutsinos… - Nature …, 2024 - nature.com
Unstable proteins are prone to form non-native interactions with other proteins and thereby
may become toxic. To mitigate this, destabilized proteins are targeted by the protein quality …
may become toxic. To mitigate this, destabilized proteins are targeted by the protein quality …
Monogenic causes of non-obstructive azoospermia: challenges, established knowledge, limitations and perspectives
It is estimated that one in 100 men have azoospermia, the complete lack of sperm in the
ejaculate. Currently,~ 20% of azoospermia cases remain idiopathic. Non-obstructive …
ejaculate. Currently,~ 20% of azoospermia cases remain idiopathic. Non-obstructive …
Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth
Identification of pregnancies at risk of preterm birth (PTB), the leading cause of newborn
deaths, remains challenging given the syndromic nature of the disease. We report a …
deaths, remains challenging given the syndromic nature of the disease. We report a …
Predicting disease severity in metachromatic leukodystrophy using protein activity and a patient phenotype matrix
Background Metachromatic leukodystrophy (MLD) is a lysosomal storage disorder caused
by mutations in the arylsulfatase A gene (ARSA) and categorized into three subtypes …
by mutations in the arylsulfatase A gene (ARSA) and categorized into three subtypes …
Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation
Abstract Interpretation of genomic variation plays an essential role in the analysis of cancer
and monogenic disease, and increasingly also in complex trait disease, with applications …
and monogenic disease, and increasingly also in complex trait disease, with applications …
Novel gene-specific Bayesian Gaussian mixture model to predict the missense variants pathogenicity of Sanfilippo syndrome
EEA Mohammed, AG Fayez, NM Abdelfattah… - Scientific Reports, 2024 - nature.com
MPS III is an autosomal recessive lysosomal storage disease caused mainly by missense
variants in the NAGLU, GNS, HGSNAT, and SGSH genes. The pathogenicity interpretation …
variants in the NAGLU, GNS, HGSNAT, and SGSH genes. The pathogenicity interpretation …
Meta-EA: a gene-specific combination of available computational tools for predicting missense variant effects
Computational methods for estimating missense variant impact suffer from inconsistent
performance across genes, which poses a major challenge for their reliable use in clinical …
performance across genes, which poses a major challenge for their reliable use in clinical …
Functional profiling of the sequence stockpile: a protein pair-based assessment of in silico prediction tools
Motivation In silico functional annotation of proteins is crucial to narrowing the sequencing-
accelerated gap in our understanding of protein activities. Numerous function annotation …
accelerated gap in our understanding of protein activities. Numerous function annotation …