Cloud computing security: A survey

IM Khalil, A Khreishah, M Azeem - Computers, 2014 - mdpi.com
Cloud computing is an emerging technology paradigm that migrates current technological
and computing concepts into utility-like solutions similar to electricity and water systems …

ScalaBLAST: A scalable implementation of BLAST for high-performance data-intensive bioinformatics analysis

C Oehmen, J Nieplocha - IEEE Transactions on Parallel and …, 2006 - ieeexplore.ieee.org
Genes in an organism's DNA (genome) have embedded in them information about proteins,
which are the molecules that do most of a cell's work. A typical bacterial genome contains on …

Efficient data access for parallel BLAST

H Lin, X Ma, P Chandramohan, A Geist… - 19th IEEE …, 2005 - ieeexplore.ieee.org
Searching biological sequence databases is one of the most routine tasks in computational
biology. This task is significantly hampered by the exponential growth in sequence database …

Designing high performance web-based computing services to promote telemedicine database management system

I Hababeh, I Khalil, A Khreishah - IEEE transactions on …, 2014 - ieeexplore.ieee.org
Many web computing systems are running real time database services where their
information change continuously and expand incrementally. In this context, web data …

Optimization and performance analysis of CAT method for DNA sequence similarity searching and alignment

V Gancheva, H Stoev - Genes, 2024 - mdpi.com
Bioinformatics is a rapidly develo** field enabling scientific experiments via computer
models and simulations. In recent years, there has been an extraordinary growth in …

Improving network systems performance by clustering distributed database sites

I Hababeh - The Journal of Supercomputing, 2012 - Springer
Clustering network sites is a vital issue in parallel and distributed database systems DDBS.
Grou** distributed database network sites into clusters is considered an efficient way to …

Performance analysis of applying replica selection technology for data grid environments

CT Yang, CH Chen, KC Li, CH Hsu - … September 5-9, 2005. Proceedings 8, 2005 - Springer
Abstract The Data Grid enables the sharing, selection, and connection of a wide variety of
geographically distributed computational and storage resources for solving large-scale data …

[PDF][PDF] Hpcblast: Distributed blast for modern hpc clusters

S Sawyer, M Horton, C Burdyshaw, G Brook… - Proceedings of 11th …, 2019 - easychair.org
The near exponential growth in sequence data available to bioinformaticists, and the
emergence of new fields of biological research, continue to fuel an incessant need for …

Parallelism in bioinformatics workflows

LAVC Meyer, SC Rössle, PM Bisch… - … Conference on High …, 2004 - Springer
Parallel processing is frequently used in bioinformatics programs and in Database
Management Systems to improve their performance. Parallelism can be also used to …

Investigation into scaling I/O bound streaming applications productively with an all-FPGA cluster

AG Schmidt, S Datta, AA Mendon, R Sass - Parallel Computing, 2012 - Elsevier
The Reconfigurable Computing Cluster project is exploring novel parallel computing
architectures in high performance computing with FPGA devices. Although there are no …