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Twenty years of plant genome sequencing: achievements and challenges
Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …
reference genome, in December 2000 heralded the beginning of the plant genome era …
Technology-enabled great leap in deciphering plant genomes
L **e, X Gong, K Yang, Y Huang, S Zhang, L Shen… - Nature Plants, 2024 - nature.com
Plant genomes provide essential and vital basic resources for studying many aspects of
plant biology and applications (for example, breeding). From 2000 to 2020, 1,144 genomes …
plant biology and applications (for example, breeding). From 2000 to 2020, 1,144 genomes …
A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
Y Lin, C Ye, X Li, Q Chen, Y Wu, F Zhang… - Horticulture …, 2023 - academic.oup.com
A high-quality genome is the basis for studies on functional, evolutionary, and comparative
genomics. The majority of attention has been paid to the solution of complex chromosome …
genomics. The majority of attention has been paid to the solution of complex chromosome …
A telomere-to-telomere gap-free reference genome of watermelon and its mutation library provide important resources for gene discovery and breeding
Y Deng, S Liu, Y Zhang, J Tan, X Li, X Chu, B Xu… - Molecular plant, 2022 - cell.com
Watermelon, Citrullus lanatus, is the world's third largest fruit crop. Reference genomes with
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
gaps and a narrow genetic base hinder functional genomics and genetic improvement of …
A chromosomal-scale genome assembly of modern cultivated hybrid sugarcane provides insights into origination and evolution
Y Bao, Q Zhang, J Huang, S Zhang, W Yao… - Nature …, 2024 - nature.com
Sugarcane is a vital crop with significant economic and industrial value. However, the
cultivated sugarcane's ultra-complex genome still needs to be resolved due to its high ploidy …
cultivated sugarcane's ultra-complex genome still needs to be resolved due to its high ploidy …
Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis
Chili pepper (Capsicum) is known for its unique fruit pungency due to the presence of
capsaicinoids. The evolutionary history of capsaicinoid biosynthesis and the mechanism of …
capsaicinoids. The evolutionary history of capsaicinoid biosynthesis and the mechanism of …
Plant pan-genomics and its applications
J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …
not shared among individuals. The variable DNA sequences, along with the conserved core …
The integrated genomics of crop domestication and breeding
X Huang, S Huang, B Han, J Li - Cell, 2022 - cell.com
As a major event in human civilization, wild plants were successfully domesticated to be
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …
Telomere-to-telomere and gap-free reference genome assembly of the kiwifruit Actinidia chinensis
J Yue, Q Chen, Y Wang, L Zhang, C Ye… - Horticulture …, 2023 - academic.oup.com
Kiwifruit is an economically and nutritionally important fruit crop with extremely high contents
of vitamin C. However, the previously released versions of kiwifruit genomes all have a mass …
of vitamin C. However, the previously released versions of kiwifruit genomes all have a mass …