From hairballs to hypotheses–biological insights from microbial networks

L Röttjers, K Faust - FEMS microbiology reviews, 2018 - academic.oup.com
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …

Competitive interaction with keystone taxa induced negative priming under biochar amendments

L Chen, Y Jiang, C Liang, Y Luo, Q Xu, C Han, Q Zhao… - Microbiome, 2019 - Springer
Background Biochar amendments have been widely proposed as a conventional and
efficient strategy to promote soil organic carbon (SOC) sequestration via negative priming …

Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils

S Gu, Q Hu, Y Cheng, L Bai, Z Liu, W **ao… - Soil and Tillage …, 2019 - Elsevier
Soil microbiomes contribute to plant growth, health and agricultural production. However,
the influence of long-term application of different fertilizers on soil microbial diversity and …

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

N Ling, C Zhu, C Xue, H Chen, Y Duan, C Peng… - Soil Biology and …, 2016 - Elsevier
Significant differences in the microbial biomass and diversity in soil have been observed
following long-term fertilization, but little research has explored the co-occurrence patterns …

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

B Ma, Y Wang, S Ye, S Liu, E Stirling, JA Gilbert… - Microbiome, 2020 - Springer
Background Microbial interactions shape the structure and function of microbial
communities; microbial co-occurrence networks in specific environments have been widely …

Nematode grazing promotes bacterial community dynamics in soil at the aggregate level

Y Jiang, M Liu, J Zhang, Y Chen, X Chen… - The ISME …, 2017 - academic.oup.com
Nematode predation has important roles in determining bacterial community composition
and dynamics, but the extent of the effects remains largely rudimentary, particularly in …

Plant cultivars imprint the rhizosphere bacterial community composition and association networks

Y Jiang, S Li, R Li, J Zhang, Y Liu, L Lv, H Zhu… - Soil Biology and …, 2017 - Elsevier
Rhizosphere associated microbiota is of the central importance for modulating plant growth
and health. To comprehensively understand the genetic principles governing the …

Succession rate of microbial community causes flavor difference in strong-aroma Baijiu making process

Y Tan, H Zhong, D Zhao, H Du, Y Xu - International Journal of Food …, 2019 - Elsevier
Solid-state fermentation is a dynamic process involved with complex microbiome. Microbial
structure and succession significantly affect the yield and quality of fermentation productions …

[HTML][HTML] Gut microbiota-derived melatonin from Puerariae Lobatae Radix-resistant starch supplementation attenuates ischemic stroke injury via a positive microbial co …

Z Lian, Y Xu, C Wang, Y Chen, L Yuan, Z Liu… - Pharmacological …, 2023 - Elsevier
Ischemic stroke is closely associated with gut microbiota dysbiosis and intestinal barrier
dysfunction. Prebiotic intervention could modulate the intestinal microbiota, thus considered …