Visualization of omics data for systems biology
High-throughput studies of biological systems are rapidly accumulating a wealth of'omics'-
scale data. Visualization is a key aspect of both the analysis and understanding of these …
scale data. Visualization is a key aspect of both the analysis and understanding of these …
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
Abstract The Interactive Tree Of Life (https://itol. embl. de) is an online tool for the
management, display, annotation and manipulation of phylogenetic and other trees. It is …
management, display, annotation and manipulation of phylogenetic and other trees. It is …
Visualization of biomedical data
The rapid increase in volume and complexity of biomedical data requires changes in
research, communication, and clinical practices. This includes learning how to effectively …
research, communication, and clinical practices. This includes learning how to effectively …
ggmsa: A visual exploration tool for multiple sequence alignment and associated data
The identification of the conserved and variable regions in the multiple sequence alignment
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …
Continuous distributed representation of biological sequences for deep proteomics and genomics
We introduce a new representation and feature extraction method for biological sequences.
Named bio-vectors (BioVec) to refer to biological sequences in general with protein-vectors …
Named bio-vectors (BioVec) to refer to biological sequences in general with protein-vectors …
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Abstract Interactive Tree Of Life (http://itol. embl. de) is a web-based tool for the display,
manipulation and annotation of phylogenetic trees. It is freely available and open to …
manipulation and annotation of phylogenetic trees. It is freely available and open to …
Visual comparison for information visualization
Data analysis often involves the comparison of complex objects. With the ever increasing
amounts and complexity of data, the demand for systems to help with these comparisons is …
amounts and complexity of data, the demand for systems to help with these comparisons is …
The ocean sampling day consortium
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
Visualization of macromolecular structures
Structural biology is rapidly accumulating a wealth of detailed information about protein
function, binding sites, RNA, large assemblies and molecular motions. These data are …
function, binding sites, RNA, large assemblies and molecular motions. These data are …
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Abstract “Α picture is worth a thousand words.” This widely used adage sums up in a few
words the notion that a successful visual representation of a concept should enable easy …
words the notion that a successful visual representation of a concept should enable easy …