[HTML][HTML] Machine learning for plant breeding and biotechnology

M Niazian, G Niedbała - Agriculture, 2020 - mdpi.com
Classical univariate and multivariate statistics are the most common methods used for data
analysis in plant breeding and biotechnology studies. Evaluation of genetic diversity …

The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021 - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …

A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data

R Tabares-Soto, S Orozco-Arias… - PeerJ Computer …, 2020 - peerj.com
Cancer classification is a topic of major interest in medicine since it allows accurate and
efficient diagnosis and facilitates a successful outcome in medical treatments. Previous …

Transposable elements: multifunctional players in the plant genome

AH Hassan, MM Mokhtar, A El Allali - Frontiers in Plant Science, 2024 - frontiersin.org
Transposable elements (TEs) are indispensable components of eukaryotic genomes that
play diverse roles in gene regulation, recombination, and environmental adaptation. Their …

Transposable elements in plants: Recent advancements, tools and prospects

M Ramakrishnan, L Satish, A Sharma… - Plant Molecular Biology …, 2022 - Springer
Transposable elements (TEs) have long been considered junk DNA; however, the
availability of genome sequences and the growth of omics databases have accelerated the …

[HTML][HTML] Measuring performance metrics of machine learning algorithms for detecting and classifying transposable elements

S Orozco-Arias, JS Piña, R Tabares-Soto… - Processes, 2020 - mdpi.com
Because of the promising results obtained by machine learning (ML) approaches in several
fields, every day is more common, the utilization of ML to solve problems in bioinformatics. In …

Specificities and dynamics of transposable elements in land plants

C Mhiri, F Borges, MA Grandbastien - Biology, 2022 - mdpi.com
Simple Summary Transposable elements are dynamic components of plant genomes, and
display a high diversity of lineages and distribution as the result of evolutionary driving …

From tradition to innovation: conventional and deep learning frameworks in genome annotation

Z Chen, N Ain, Q Zhao, X Zhang - Briefings in Bioinformatics, 2024 - academic.oup.com
Following the milestone success of the Human Genome Project, the 'Encyclopedia of DNA
Elements (ENCODE)'initiative was launched in 2003 to unearth information about the …

Transposable elements in Rosaceae: insights into genome evolution, expression dynamics, and syntenic gene regulation

Z Yu, J Li, H Wang, B **, X Li, Z Liu… - Horticulture …, 2024 - academic.oup.com
Transposable elements (TEs) exert significant influence on plant genomic structure and
gene expression. Here, we explored TE-related aspects across 14 Rosaceae genomes …

[PDF][PDF] Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements

AP Gultyaev, C Koster… - NAR Genomics and …, 2023 - academic.oup.com
Plant long noncoding RNA enod40 is involved in the regulation of symbiotic associations
with bacteria, in particular, in nitrogen-fixing root nodules of legumes, and with fungi in …