Refactoring transcription factors for metabolic engineering

C Deng, Y Wu, X Lv, J Li, Y Liu, G Du, J Chen… - Biotechnology …, 2022 - Elsevier
Due to the ability to regulate target metabolic pathways globally and dynamically, metabolic
regulation systems composed of transcription factors have been widely used in metabolic …

Redefining fundamental concepts of transcription initiation in bacteria

C Mejía-Almonte, SJW Busby, JT Wade… - Nature Reviews …, 2020 - nature.com
Despite enormous progress in understanding the fundamentals of bacterial gene regulation,
our knowledge remains limited when compared with the number of bacterial genomes and …

Advances in promoter engineering: novel applications and predefined transcriptional control

AP Cazier, J Blazeck - Biotechnology Journal, 2021 - Wiley Online Library
Synthetic biology continues to progress by relying on more robust tools for transcriptional
control, of which promoters are the most fundamental component. Numerous studies have …

RNAs as sensors of oxidative stress in bacteria

R Buchser, P Sweet, A Anantharaman… - Annual Review of …, 2023 - annualreviews.org
Oxidative stress is an important and pervasive physical stress encountered by all kingdoms
of life, including bacteria. In this review, we briefly describe the nature of oxidative stress …

Structure and molecular mechanism of bacterial transcription activation

D Kompaniiets, D Wang, Y Yang, Y Hu, B Liu - Trends in Microbiology, 2024 - cell.com
Transcription activation is an important checkpoint of regulation of gene expression which
occurs in response to different intracellular and extracellular signals. The key elements in …

Transcription of bacterial chromatin

BA Shen, R Landick - Journal of molecular biology, 2019 - Elsevier
Decades of research have probed the interplay between chromatin (genomic DNA
associated with proteins and RNAs) and transcription by RNA polymerase (RNAP) in all …

CueR activates transcription through a DNA distortion mechanism

C Fang, SJ Philips, X Wu, K Chen, J Shi, L Shen… - Nature chemical …, 2021 - nature.com
The MerR-family transcription factors (TFs) are a large group of bacterial proteins
responding to cellular metal ions and multiple antibiotics by binding within central RNA …

Transcription activation in Escherichia coli and Salmonella

SJW Busby, DF Browning - EcoSal Plus, 2024 - journals.asm.org
Promoter-specific activation of transcript initiation provides an important regulatory device in
Escherichia coli and Salmonella. Here, we describe the different mechanisms that operate …

Genomic footprinting uncovers global transcription factor responses to amino acids in Escherichia coli

J Trouillon, PF Doubleday, U Sauer - Cell Systems, 2023 - cell.com
Our knowledge of transcriptional responses to changes in nutrient availability comes
primarily from few well-studied transcription factors (TFs), often lacking an unbiased genome …

Bacterial MerR family transcription regulators: activationby distortion: The mechanism of transcription regulation by MerR

C Fang, Y Zhang - Acta Biochimica et Biophysica Sinica, 2021 - pmc.ncbi.nlm.nih.gov
Transcription factors (TFs) modulate gene expression by regulating the accessibility of
promoter DNA to RNA polymerases (RNAPs) in bacteria. The MerR family TFs are a large …