Paramagnetic chemical probes for studying biological macromolecules

Q Miao, C Nitsche, H Orton, M Overhand… - Chemical …, 2022 - ACS Publications
Paramagnetic chemical probes have been used in electron paramagnetic resonance (EPR)
and nuclear magnetic resonance (NMR) spectroscopy for more than four decades. Recent …

Distance measurements on spin-labelled biomacromolecules by pulsed electron paramagnetic resonance

G Jeschke, Y Polyhach - Physical Chemistry Chemical Physics, 2007 - pubs.rsc.org
The biological function of protein, DNA, and RNA molecules often depends on relative
movements of domains with dimensions of a few nanometers. This length scale can be …

Long-range distance determinations in biomacromolecules by EPR spectroscopy

O Schiemann, TF Prisner - Quarterly reviews of biophysics, 2007 - cambridge.org
Electron paramagnetic resonance (EPR) spectroscopy provides a variety of tools to study
structures and structural changes of large biomolecules or complexes thereof. In order to …

The determination of pair distance distributions by pulsed ESR using Tikhonov regularization

YW Chiang, PP Borbat, JH Freed - Journal of Magnetic Resonance, 2005 - Elsevier
Pulsed ESR techniques with the aid of site-directed spin labeling have proven useful in
providing unique structural information about proteins. The determination of distance …

Physiological-temperature distance measurement in nucleic acid using triarylmethyl-based spin labels and pulsed dipolar EPR spectroscopy

GY Shevelev, OA Krumkacheva… - Journal of the …, 2014 - ACS Publications
Resolving the nanometer-scale structure of biomolecules in natural conditions still remains a
challenging task. We report the first distance measurement in nucleic acid at physiological …

Counting the monomers in nanometer-sized oligomers by pulsed electron− electron double resonance

BE Bode, D Margraf, J Plackmeyer… - Journal of the …, 2007 - ACS Publications
In a lot of cases active biomolecules are complexes of higher order, thus methods capable of
counting the number of building blocks and elucidating their geometric arrangement are …

[PDF][PDF] Long-range distance measurements on nucleic acids in cells by pulsed EPR spectroscopy

I Krstic, R Hansel, O Romainczyk, JW Engels… - Angew. Chem. Int …, 2011 - prisner.de
The tertiary structure and conformational dynamics of ribonucleic acids (RNAs) are essential
for their function as biological catalysts, regulators, and structural scaffolds.[1] X-ray …

Structure and internal dynamics of short RNA duplexes determined by a combination of pulsed EPR methods and MD simulations

M Gauger, M Heinz, ALJ Halbritter, LS Stelzl… - Angewandte …, 2024 - Wiley Online Library
We used EPR spectroscopy to characterize the structure of RNA duplexes and their internal
twist, stretch and bending motions. We prepared eight 20‐base‐pair‐long RNA duplexes …

A PELDOR-based nanometer distance ruler for oligonucleotides

O Schiemann, N Piton, Y Mu, G Stock… - Journal of the …, 2004 - ACS Publications
A pulsed electron paramagnetic resonance (EPR) spectroscopic ruler for oligonucleotides
was developed using a series of duplex DNAs. The spin-labeling is accomplished during …

Gd3+ Complexes as Potential Spin Labels for High Field Pulsed EPR Distance Measurements

AM Raitsimring, C Gunanathan, A Potapov… - Journal of the …, 2007 - ACS Publications
Pulse electron− electron double resonance distance measurements between two high spin
Gd3+ ions in a novel bis-Gd3+ complex involving two pyridine-based gadolinium …