Cross-species insights into genomic adaptations to hypoxia

ME Pamenter, JE Hall, Y Tanabe… - Frontiers in Genetics, 2020 - frontiersin.org
Over millions of years, vertebrate species populated vast environments spanning the globe.
Among the most challenging habitats encountered were those with limited availability of …

Hypoxia Inducible Factor pathway proteins in high-altitude mammals

FS Lee - Trends in biochemical sciences, 2024 - cell.com
Humans and other mammals inhabit hypoxic high-altitude locales. In many of these species,
genes under positive selection include ones in the Hypoxia Inducible Factor (HIF) pathway …

The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism

K Kim, T Kwon, T Dessie, DA Yoo, OA Mwai, J Jang… - Nature Genetics, 2020 - nature.com
Cattle pastoralism plays a central role in human livelihood in Africa. However, the genetic
history of its success remains unknown. Here, through whole-genome sequence analysis of …

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

WY Low, R Tearle, R Liu, S Koren, A Rhie… - Nature …, 2020 - nature.com
Inbred animals were historically chosen for genome analysis to circumvent assembly issues
caused by haplotype variation but this resulted in a composite of the two genomes. Here we …

Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations

X Liu, L Lin, MHS Sinding, LD Bertola… - Nature …, 2024 - nature.com
The blue wildebeest (Connochaetes taurinus) is a keystone species in savanna ecosystems
from southern to eastern Africa, and is well known for its spectacular migrations and locally …

First gene-edited calf with reduced susceptibility to a major viral pathogen

AM Workman, MP Heaton, BL Vander Ley… - PNAS …, 2023 - academic.oup.com
Bovine viral diarrhea virus (BVDV) is one of the most important viruses affecting the health
and well-being of bovine species throughout the world. Here, we used CRISPR-mediated …

BGVD: an integrated database for bovine sequencing variations and selective signatures

N Chen, W Fu, J Zhao, J Shen, Q Chen… - Genomics …, 2020 - academic.oup.com
Next-generation sequencing has yielded a vast amount of cattle genomic data for global
characterization of population genetic diversity and identification of genomic regions under …

[PDF][PDF] Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle

ES Rice, S Koren, A Rhie, MP Heaton… - …, 2020 - academic.oup.com
Background The development of trio binning as an approach for assembling diploid
genomes has enabled the creation of fully haplotype-resolved reference genomes. Unlike …

Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity

CJ Kelly, CG Chitko-McKown, EB Chuong - Genome Research, 2022 - genome.cshlp.org
Cattle are an important livestock species, and map** the genomic architecture of
agriculturally relevant traits such as disease susceptibility is a major challenge in the bovine …

Association of ARRDC3 and NFIA variants with bovine congestive heart failure in feedlot cattle

MP Heaton, GP Harhay, AS Bassett, HJ Clark… - …, 2024 - pmc.ncbi.nlm.nih.gov
Background Bovine congestive heart failure (BCHF) has become increasingly prevalent
among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in …