The human phenotype ontology in 2017

S Köhler, NA Vasilevsky, M Engelstad… - Nucleic acids …, 2017 - academic.oup.com
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

[PDF][PDF] The human phenotype ontology in 2017

S Kohler, NA Vasilevsky, M Engelstad, E Foster… - 2017 - repository.ubn.ru.nl
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

[HTML][HTML] Toxicity by descent: A comparative approach for chemical hazard assessment

JK Colbourne, JR Shaw, E Sostare, C Rivetti… - Environmental …, 2022 - Elsevier
Toxicology is traditionally divided between human and eco-toxicology. In the shared pursuit
of environmental health, this separation does not account for discoveries made in the …

Found In Translation: a machine learning model for mouse-to-human inference

R Normand, W Du, M Briller, R Gaujoux… - Nature …, 2018 - nature.com
Cross-species differences form barriers to translational research that ultimately hinder the
success of clinical trials, yet knowledge of species differences has yet to be systematically …

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

M Filteau, V Hamel, MC Pouliot… - Molecular Systems …, 2015 - embopress.org
Since deleterious mutations may be rescued by secondary mutations during evolution,
compensatory evolution could identify genetic solutions leading to therapeutic targets. Here …

Co-controllability of drug-disease-gene network

PG Sun - New Journal of Physics, 2015 - iopscience.iop.org
Controllability of a single network often focuses on the determination of the network's
minimum dominating set, which aims to elaborate how to control the whole network with …

The human drug–disease–gene network

PG Sun - Information Sciences, 2015 - Elsevier
How to understand the correlations of drugs, diseases and genes from a view of network-
based framework is of great importance for disease diagnosis, treatments and drug …

Yeast phenomics: an experimental approach for modeling gene interaction networks that buffer disease

JL Hartman IV, C Stisher, DA Outlaw, J Guo, NA Shah… - Genes, 2015 - mdpi.com
The genome project increased appreciation of genetic complexity underlying disease
phenotypes: many genes contribute each phenotype and each gene contributes multiple …

OMAMO: orthology-based alternative model organism selection

A Nicheperovich, AM Altenhoff, C Dessimoz… - …, 2022 - academic.oup.com
The conservation of pathways and genes across species has allowed scientists to use non-
human model organisms to gain a deeper understanding of human biology. However, the …

A multi-species functional embedding integrating sequence and network structure

T Lim, T Schaffner, M Crovella - Research in Computational Molecular …, 2018 - Springer
Methods. We introduce a new algorithm, Homology Assessment across Networks using
Diffusion and Landmarks (HANDL), that leverages graph kernels to embed nodes from two …