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[HTML][HTML] Bacteroides and related species: The keystone taxa of the human gut microbiota
JH Shin, G Tillotson, TN MacKenzie, CA Warren… - Anaerobe, 2024 - Elsevier
Microbial communities play a significant role in maintaining ecosystems in a healthy
homeostasis. Presently, in the human gastrointestinal tract, there are certain taxonomic …
homeostasis. Presently, in the human gastrointestinal tract, there are certain taxonomic …
Parabacteroides distasonis: intriguing aerotolerant gut anaerobe with emerging antimicrobial resistance and pathogenic and probiotic roles in human health
JC Ezeji, DK Sarikonda, A Hopperton, HL Erkkila… - Gut …, 2021 - Taylor & Francis
Parabacteroides distasonis is the type strain for the genus Parabacteroides, a group of gram-
negative anaerobic bacteria that commonly colonize the gastrointestinal tract of numerous …
negative anaerobic bacteria that commonly colonize the gastrointestinal tract of numerous …
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …
an ever increasing number of taxon names and associated sequences in public data …
Valid publication of the names of forty-two phyla of prokaryotes
A Oren, GM Garrity - International Journal of Systematic …, 2021 - microbiologyresearch.org
After the International Committee on Systematics of Prokaryotes (ICSP) had voted to include
the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes …
the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes …
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
A Hördt, MG López, JP Meier-Kolthoff… - Frontiers in …, 2020 - frontiersin.org
The class Alphaproteobacteria is comprised of a diverse assemblage of Gram-negative
bacteria that includes organisms of varying morphologies, physiologies and habitat …
bacteria that includes organisms of varying morphologies, physiologies and habitat …
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Taxonomy is an organizing principle of biology and is ideally based on evolutionary
relationships among organisms. Development of a robust bacterial taxonomy has been …
relationships among organisms. Development of a robust bacterial taxonomy has been …
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Advancement of DNA sequencing technology allows the routine use of genome sequences
in the various fields of microbiology. The information held in genome sequences proved to …
in the various fields of microbiology. The information held in genome sequences proved to …
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
The application of phylogenetic taxonomic procedures led to improvements in the
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …
classification of bacteria assigned to the phylum Actinobacteria but even so there remains a …
Bacteroidetes use thousands of enzyme combinations to break down glycans
P Lapébie, V Lombard, E Drula, N Terrapon… - Nature …, 2019 - nature.com
Unlike proteins, glycan chains are not directly encoded by DNA, but by the specificity of the
enzymes that assemble them. Theoretical calculations have proposed an astronomical …
enzymes that assemble them. Theoretical calculations have proposed an astronomical …