Use of molecular docking computational tools in drug discovery

F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …

Tetrazoles via multicomponent reactions

CG Neochoritis, T Zhao, A Domling - Chemical reviews, 2019 - ACS Publications
Tetrazole derivatives are a prime class of heterocycles, very important to medicinal
chemistry and drug design due to not only their bioisosterism to carboxylic acid and amide …

The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins

D Kozakov, LE Grove, DR Hall, T Bohnuud… - Nature protocols, 2015 - nature.com
FTMap is a computational map** server that identifies binding hot spots of
macromolecules—ie, regions of the surface with major contributions to the ligand-binding …

Fragment-based approaches in drug discovery and chemical biology

DE Scott, AG Coyne, SA Hudson, C Abell - Biochemistry, 2012 - ACS Publications
Fragment-based approaches to finding novel small molecules that bind to proteins are now
firmly established in drug discovery and chemical biology. Initially developed primarily in a …

Molecular obesity, potency and other addictions in drug discovery

MM Hann - MedChemComm, 2011 - pubs.rsc.org
Despite the increase in global biology and chemistry knowledge the discovery of effective
and safe new drugs seems to become harder rather than easier. Some of this challenge is …

Recent developments in fragment-based drug discovery

M Congreve, G Chessari, D Tisi… - Journal of medicinal …, 2008 - ACS Publications
The field of fragment-based drug discovery (FBDDa) has developed significantly over the
past 10 years and is now recognized as a tangible alternative to more traditional methods of …

Optimizing fragment and scaffold docking by use of molecular interaction fingerprints

G Marcou, D Rognan - Journal of chemical information and …, 2007 - ACS Publications
Protein− ligand interaction fingerprints have been used to postprocess docking poses of
three ligand data sets: a set of 40 low-molecular-weight compounds from the Protein Data …

Fragment linking strategies for structure-based drug design

A Bancet, C Raingeval, T Lomberget… - Journal of medicinal …, 2020 - ACS Publications
Fragment-based drug discovery is a strategy widely used in both academia and
pharmaceutical companies to generate small-molecule protein inhibitors and drug …

Experiences in fragment-based drug discovery

CW Murray, ML Verdonk, DC Rees - Trends in pharmacological sciences, 2012 - cell.com
Fragment-based drug discovery (FBDD) has become established in both industry and
academia as an alternative approach to high-throughput screening for the generation of …

Fragment based drug design: from experimental to computational approaches

A Kumar, A Voet, KYJ Zhang - Current medicinal chemistry, 2012 - benthamdirect.com
Fragment based drug design has emerged as an effective alternative to high throughput
screening for the identification of lead compounds in drug discovery in the past fifteen years …