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The sponge microbiome project
Rhododendron delavayi Franch. is globally famous as an ornamental plant. Its distribution in
southwest China covers several different habitats and environments. However, not much …
southwest China covers several different habitats and environments. However, not much …
Integration of background knowledge for automatic detection of inconsistencies in gene ontology annotation
Motivation Biological background knowledge plays an important role in the manual quality
assurance (QA) of biological database records. One such QA task is the detection of …
assurance (QA) of biological database records. One such QA task is the detection of …
EcoGene 3.0
J Zhou, KE Rudd - Nucleic acids research, 2012 - academic.oup.com
Abstract EcoGene (http://ecogene. org) is a database and website devoted to continuously
improving the structural and functional annotation of Escherichia coli K-12, one of the most …
improving the structural and functional annotation of Escherichia coli K-12, one of the most …
ComPPI: a cellular compartment-specific database for protein–protein interaction network analysis
Here we present ComPPI, a cellular compartment-specific database of proteins and their
interactions enabling an extensive, compartmentalized protein–protein interaction network …
interactions enabling an extensive, compartmentalized protein–protein interaction network …
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
The ongoing functional annotation of proteins relies upon the work of curators to capture
experimental findings from scientific literature and apply them to protein sequence and …
experimental findings from scientific literature and apply them to protein sequence and …
Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes
The evolution of powered flight is a major innovation that has facilitated the success of
insects. Previously, studies of birds, bats, and insects have detected molecular signatures of …
insects. Previously, studies of birds, bats, and insects have detected molecular signatures of …
Soft-prompt tuning to predict lung cancer using primary care free-text Dutch medical notes
We examine the use of large Transformer-based pretrained language models (PLMs) for the
problem of early prediction of lung cancer using free-text patient medical notes of Dutch …
problem of early prediction of lung cancer using free-text patient medical notes of Dutch …
Extracting cross-ontology weighted association rules from gene ontology annotations
Gene Ontology (GO) is a structured repository of concepts (GO Terms) that are associated to
one or more gene products through a process referred to as annotation. The analysis of …
one or more gene products through a process referred to as annotation. The analysis of …
[HTML][HTML] Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO …
Abstract The Gene Ontology (GO), a set of three sub-ontologies, is one of the most popular
bio-ontologies used for describing gene product characteristics. GO annotation data …
bio-ontologies used for describing gene product characteristics. GO annotation data …
GSAn: an alternative to enrichment analysis for annotating gene sets
The revolution in new sequencing technologies is greatly leading to new understandings of
the relations between genotype and phenotype. To interpret and analyze data that are …
the relations between genotype and phenotype. To interpret and analyze data that are …