Inferring interaction networks from multi-omics data

JS Hawe, FJ Theis, M Heinig - Frontiers in genetics, 2019 - frontiersin.org
A major goal in systems biology is a comprehensive description of the entirety of all complex
interactions between different types of biomolecules—also referred to as the interactome …

Federated multi-task learning

V Smith, CK Chiang, M Sanjabi… - Advances in neural …, 2017 - proceedings.neurips.cc
Federated learning poses new statistical and systems challenges in training machine
learning models over distributed networks of devices. In this work, we show that multi-task …

Optimization methods for large-scale machine learning

L Bottou, FE Curtis, J Nocedal - SIAM review, 2018 - SIAM
This paper provides a review and commentary on the past, present, and future of numerical
optimization algorithms in the context of machine learning applications. Through case …

Learning graphs from data: A signal representation perspective

X Dong, D Thanou, M Rabbat… - IEEE Signal Processing …, 2019 - ieeexplore.ieee.org
The construction of a meaningful graph topology plays a crucial role in the effective
representation, processing, analysis, and visualization of structured data. When a natural …

[HTML][HTML] Optimising network modelling methods for fMRI

U Pervaiz, D Vidaurre, MW Woolrich, SM Smith - NeuroImage, 2020 - Elsevier
A major goal of neuroimaging studies is to develop predictive models to analyze the
relationship between whole brain functional connectivity patterns and behavioural traits …

Learning Laplacian matrix in smooth graph signal representations

X Dong, D Thanou, P Frossard… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
The construction of a meaningful graph plays a crucial role in the success of many graph-
based representations and algorithms for handling structured data, especially in the …

[BUCH][B] Robust statistics: theory and methods (with R)

RA Maronna, RD Martin, VJ Yohai, M Salibián-Barrera - 2019 - books.google.com
A new edition of this popular text on robust statistics, thoroughly updated to include new and
improved methods and focus on implementation of methodology using the increasingly …

[PDF][PDF] What regularized auto-encoders learn from the data-generating distribution

G Alain, Y Bengio - The Journal of Machine Learning Research, 2014 - jmlr.org
What do auto-encoders learn about the underlying data-generating distribution? Recent
work suggests that some auto-encoder variants do a good job of capturing the local manifold …

Proximal Newton-type methods for minimizing composite functions

JD Lee, Y Sun, MA Saunders - SIAM Journal on Optimization, 2014 - SIAM
We generalize Newton-type methods for minimizing smooth functions to handle a sum of two
convex functions: a smooth function and a nonsmooth function with a simple proximal …