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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry
DP Donnelly, CM Rawlins, CJ DeHart, L Fornelli… - Nature …, 2019 - nature.com
One gene can give rise to many functionally distinct proteoforms, each of which has a
characteristic molecular mass. Top-down mass spectrometry enables the analysis of intact …
characteristic molecular mass. Top-down mass spectrometry enables the analysis of intact …
A high-stringency blueprint of the human proteome
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …
(HPP) in 2010, creating an international framework for global collaboration, data sharing …
The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells
Human biology is tightly linked to proteins, yet most measurements do not precisely
determine alternatively spliced sequences or posttranslational modifications. Here, we …
determine alternatively spliced sequences or posttranslational modifications. Here, we …
Protein analysis by shotgun/bottom-up proteomics
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
[HTML][HTML] Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics
Selected reaction monitoring on a triple quadrupole mass spectrometer is currently
experiencing a renaissance within the proteomics community for its, as yet, unparalleled …
experiencing a renaissance within the proteomics community for its, as yet, unparalleled …
Andromeda: a peptide search engine integrated into the MaxQuant environment
J Cox, N Neuhauser, A Michalski… - Journal of proteome …, 2011 - ACS Publications
A key step in mass spectrometry (MS)-based proteomics is the identification of peptides in
sequence databases by their fragmentation spectra. Here we describe Andromeda, a novel …
sequence databases by their fragmentation spectra. Here we describe Andromeda, a novel …
The integrin adhesome: from genes and proteins to human disease
SE Winograd-Katz, R Fässler, B Geiger… - … reviews Molecular cell …, 2014 - nature.com
The adhesive interactions of cells with their environment through the integrin family of
transmembrane receptors have key roles in regulating multiple aspects of cellular …
transmembrane receptors have key roles in regulating multiple aspects of cellular …
[HTML][HTML] Status of large-scale analysis of post-translational modifications by mass spectrometry
Cellular function can be controlled through the gene expression program, but often protein
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra
V Dorfer, P Pichler, T Stranzl, J Stadlmann… - Journal of proteome …, 2014 - ACS Publications
Today's highly accurate spectra provided by modern tandem mass spectrometers offer
considerable advantages for the analysis of proteomic samples of increased complexity …
considerable advantages for the analysis of proteomic samples of increased complexity …
Deep proteome and transcriptome map** of a human cancer cell line
While the number and identity of proteins expressed in a single human cell type is currently
unknown, this fundamental question can be addressed by advanced mass spectrometry …
unknown, this fundamental question can be addressed by advanced mass spectrometry …