Halogen bonding: an underestimated player in membrane–ligand interactions

RS Nunes, D Vila-Viçosa, PJ Costa - Journal of the American …, 2021 - ACS Publications
Halogen bonds (XBs) are noncovalent interactions where halogen atoms act as electrophilic
species interacting with Lewis bases. These interactions are relevant in biochemical …

[HTML][HTML] Há algo novo no reconhecimento molecular aplicado à química medicinal?

HH Fokoue, PSM Pinheiro, CAM Fraga… - Química …, 2020 - SciELO Brasil
Resumo In Medicinal Chemistry, the knowledge, the study and the understanding of the
intermolecular interactions inherent to the molecular recognition of a ligand by its target …

Polarizable empirical force field for halogen-containing compounds based on the classical Drude oscillator

FY Lin, AD MacKerell Jr - Journal of chemical theory and …, 2018 - ACS Publications
The quality of the force field is crucial to ensure the accuracy of simulations used in
molecular modeling, including computer-aided drug design (CADD). To perform more …

Insights into halogen bond-driven enantioseparations

P Peluso, V Mamane, E Aubert, A Dessì… - … of Chromatography A, 2016 - Elsevier
Although the halogen bond (XB) has been so far mainly studied in silico and in the solid
state, its potential impact in solution is yet to be fully understood. In this study, we describe …

[HTML][HTML] Computer-assisted discovery and evaluation of potential ribosomal protein S6 kinase beta 2 inhibitors

F Yu, X Wu, WS Chen, F Yan, W Li - Computers in Biology and Medicine, 2024 - Elsevier
S6K2 is an important protein in mTOR signaling pathway and cancer. To identify potential
S6K2 inhibitors for mTOR pathway treatment, a virtual screening of 1,575,957 active …

Biomolecular simulations of halogen bonds with a GROMOS force field

R Nunes, D Vila-Vicosa, M Machuqueiro… - Journal of Chemical …, 2018 - ACS Publications
Halogen bonds (XBs) are non-covalent interactions in which halogens (X), acting as
electrophiles, interact with Lewis bases. XBs are able to mediate protein–ligand recognition …

Halogen bond in high-performance liquid chromatography enantioseparations: Description, features and modelling

R Dallocchio, A Dessì, M Solinas, A Arras… - … of Chromatography A, 2018 - Elsevier
Halogen bond (XB)-driven enantioseparations involve halogen-centred regions of electronic
charge depletion (σ-hole) as electrophilic recognition sites. The knowledge in this field is still …

[HTML][HTML] The Significance of Halogen Bonding in Ligand–Receptor Interactions: The Lesson Learned from Molecular Dynamic Simulations of the D4 Receptor

R Kurczab, K Kucwaj-Brysz, P Śliwa - Molecules, 2019 - mdpi.com
Recently, a computational approach combining a structure–activity relationship library
containing pairs of halogenated ligands and their corresponding unsubstituted ligands …

Absolute binding free energies between T4 lysozyme and 141 small molecules: calculations based on multiple rigid receptor configurations

B **e, TH Nguyen, DDL Minh - Journal of chemical theory and …, 2017 - ACS Publications
We demonstrate the feasibility of estimating protein–ligand binding free energies using
multiple rigid receptor configurations. On the basis of T4 lysozyme snapshots extracted from …

Predicting the affinity of halogenated reversible covalent inhibitors through relative binding free energy

J Lameira, V Bonatto, L Cianni… - Physical Chemistry …, 2019 - pubs.rsc.org
Nitrile reversible covalent inhibitors of human cathepsin L (hCatL) bind covalently to the side
chain of the catalytic Cys25 residue in the S1 pocket to form thioimidates. Predicting the …