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Transcription as a source of genome instability
N Kim, S **ks-Robertson - Nature Reviews Genetics, 2012 - nature.com
Alterations in genome sequence and structure contribute to somatic disease, affect the
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …
fitness of subsequent generations and drive evolutionary processes. The crucial roles of …
Old trade, new tricks: insights into the spontaneous mutation process from the partnering of classical mutation accumulation experiments with high-throughput …
Mutations spawn genetic variation which, in turn, fuels evolution. Hence, experimental
investigations into the rate and fitness effects of spontaneous mutations are central to the …
investigations into the rate and fitness effects of spontaneous mutations are central to the …
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
Knowledge of the rate and nature of spontaneous mutation is fundamental to understanding
evolutionary and molecular processes. In this report, we analyze spontaneous mutations …
evolutionary and molecular processes. In this report, we analyze spontaneous mutations …
Evidence that mutation is universally biased towards AT in bacteria
Mutation is the engine that drives evolution and adaptation forward in that it generates the
variation on which natural selection acts. Mutation is a random process that nevertheless …
variation on which natural selection acts. Mutation is a random process that nevertheless …
Synonymous Codon Usage in Escherichia coli: Selection for Translational Accuracy
N Stoletzki, A Eyre-Walker - Molecular biology and evolution, 2007 - academic.oup.com
In many organisms, selection acts on synonymous codons to improve translation. However,
the precise basis of this selection remains unclear in the majority of species. Selection could …
the precise basis of this selection remains unclear in the majority of species. Selection could …
Whole-genome mutational biases in bacteria
A fundamental biological question is what forces shape the guanine plus cytosine (GC)
content of genomes. We studied the specificity and rate of different mutational biases in real …
content of genomes. We studied the specificity and rate of different mutational biases in real …
Transcription-associated mutagenesis
Transcription requires unwinding complementary DNA strands, generating torsional stress,
and sensitizing the exposed single strands to chemical reactions and endogenous …
and sensitizing the exposed single strands to chemical reactions and endogenous …
The evolution of genetic regulatory systems in bacteria
The genomes of bacterial species show enormous plasticity in the function of individual
genes, in genome organization and in regulatory organization. Over millions of years, both …
genes, in genome organization and in regulatory organization. Over millions of years, both …
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria
Background Because bacteria do not have a robust fossil record, attempts to infer the timing
of events in their evolutionary history requires comparisons of molecular sequences. This …
of events in their evolutionary history requires comparisons of molecular sequences. This …
Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis
Transition bias, an overabundance of transitions relative to transversions, has been widely
reported among studies of the rates and spectra of spontaneous mutations. However …
reported among studies of the rates and spectra of spontaneous mutations. However …