[HTML][HTML] Insertions and deletions in protein evolution and engineering

S Savino, T Desmet, J Franceus - Biotechnology Advances, 2022 - Elsevier
Protein evolution or engineering studies are traditionally focused on amino acid
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …

Determinants of mutation rate variation in the human germline

L Ségurel, MJ Wyman… - Annual review of genomics …, 2014 - annualreviews.org
Because germline mutations are the source of all evolutionary adaptations and heritable
diseases, characterizing their properties and the rate at which they arise across individuals …

Evolution of the SARS-CoV-2 mutational spectrum

JD Bloom, AC Beichman, RA Neher… - Molecular Biology and …, 2023 - academic.oup.com
SARS-CoV-2 evolves rapidly in part because of its high mutation rate. Here, we examine
whether this mutational process itself has changed during viral evolution. To do this, we …

Drift-barrier hypothesis and mutation-rate evolution

W Sung, MS Ackerman, SF Miller, TG Doak… - Proceedings of the …, 2012 - pnas.org
Mutation dictates the tempo and mode of evolution, and like all traits, the mutation rate is
subject to evolutionary modification. Here, we report refined estimates of the mutation rate …

Direct estimate of the rate of germline mutation in a bird

L Smeds, A Qvarnström, H Ellegren - Genome research, 2016 - genome.cshlp.org
The fidelity of DNA replication together with repair mechanisms ensure that the genetic
material is properly copied from one generation to another. However, on extremely rare …

Experimental estimates of germline mutation rate in eukaryotes: a phylogenetic meta-analysis

Y Wang, DJ Obbard - Evolution Letters, 2023 - academic.oup.com
Mutation is the ultimate source of all genetic variation, and over the last 10 years the ready
availability of whole-genome sequencing has permitted direct estimation of mutation rate for …

Old trade, new tricks: insights into the spontaneous mutation process from the partnering of classical mutation accumulation experiments with high-throughput …

V Katju, U Bergthorsson - Genome biology and evolution, 2019 - academic.oup.com
Mutations spawn genetic variation which, in turn, fuels evolution. Hence, experimental
investigations into the rate and fitness effects of spontaneous mutations are central to the …

Maintenance and loss of duplicated genes by dosage subfunctionalization

JF Gout, M Lynch - Molecular biology and evolution, 2015 - academic.oup.com
Whole-genome duplications (WGDs) have contributed to gene-repertoire enrichment in
many eukaryotic lineages. However, most duplicated genes are eventually lost and it is still …

Asymmetric context-dependent mutation patterns revealed through mutation–accumulation experiments

W Sung, MS Ackerman, JF Gout… - Molecular biology …, 2015 - academic.oup.com
Despite the general assumption that site-specific mutation rates are independent of the local
sequence context, a growing body of evidence suggests otherwise. To further examine …

The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe

A Farlow, H Long, S Arnoux, W Sung, TG Doak… - Genetics, 2015 - academic.oup.com
The rate at which new mutations arise in the genome is a key factor in the evolution and
adaptation of species. Here we describe the rate and spectrum of spontaneous mutations for …