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Inverse statistical problems: from the inverse Ising problem to data science
HC Nguyen, R Zecchina, J Berg - Advances in Physics, 2017 - Taylor & Francis
Inverse problems in statistical physics are motivated by the challenges of 'big data'in
different fields, in particular high-throughput experiments in biology. In inverse problems, the …
different fields, in particular high-throughput experiments in biology. In inverse problems, the …
Predicting evolution
The face of evolutionary biology is changing: from reconstructing and analysing the past to
predicting future evolutionary processes. Recent developments include prediction of …
predicting future evolutionary processes. Recent developments include prediction of …
A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy
Checkpoint blockade immunotherapies enable the host immune system to recognize and
destroy tumour cells. Their clinical activity has been correlated with activated T-cell …
destroy tumour cells. Their clinical activity has been correlated with activated T-cell …
Evolutionary determinants of cancer
M Greaves - Cancer discovery, 2015 - aacrjournals.org
Our understanding of cancer is being transformed by exploring clonal diversity, drug
resistance, and causation within an evolutionary framework. The therapeutic resilience of …
resistance, and causation within an evolutionary framework. The therapeutic resilience of …
Towards multidrug adaptive therapy
A new ecologically inspired paradigm in cancer treatment known as “adaptive therapy”
capitalizes on competitive interactions between drug-sensitive and drug-resistant subclones …
capitalizes on competitive interactions between drug-sensitive and drug-resistant subclones …
Computational approaches to modelling and optimizing cancer treatment
Computational models can be applied to optimize treatment schedules and model treatment
responses in cancer therapy. In this Review, we provide an overview of such computational …
responses in cancer therapy. In this Review, we provide an overview of such computational …
Steering and controlling evolution—from bioengineering to fighting pathogens
Control interventions steer the evolution of molecules, viruses, microorganisms or other cells
towards a desired outcome. Applications range from engineering biomolecules and …
towards a desired outcome. Applications range from engineering biomolecules and …
Multidrug cancer therapy in metastatic castrate-resistant prostate cancer: an evolution-based strategy
Purpose: Integration of evolutionary dynamics into systemic therapy for metastatic cancers
can prolong tumor control compared with standard maximum tolerated dose (MTD) …
can prolong tumor control compared with standard maximum tolerated dose (MTD) …
Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance
Evolved resistance to one antibiotic may be associated with" collateral" sensitivity to other
drugs. Here, we provide an extensive quantitative characterization of collateral effects in …
drugs. Here, we provide an extensive quantitative characterization of collateral effects in …
Deep reinforcement learning for the control of microbial co-cultures in bioreactors
Multi-species microbial communities are widespread in natural ecosystems. When
employed for biomanufacturing, engineered synthetic communities have shown increased …
employed for biomanufacturing, engineered synthetic communities have shown increased …